Variant report

Variant	rs57508396
Chromosome Location	chr11:66776361-66776362
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11538048	1.00[AMR][1000 genomes]
rs55962689	1.00[AMR][1000 genomes]
rs56049904	1.00[AMR][1000 genomes]
rs56194916	1.00[AMR][1000 genomes]
rs56705397	1.00[AMR][1000 genomes]
rs56728386	1.00[AMR][1000 genomes]
rs57237794	1.00[AMR][1000 genomes]
rs57241231	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57550064	1.00[AMR][1000 genomes]
rs57630565	1.00[AMR][1000 genomes]
rs58201175	1.00[AMR][1000 genomes]
rs59663951	1.00[AMR][1000 genomes]
rs59868470	1.00[AMR][1000 genomes]
rs60523317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555226	chr11:66579572-66845362	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv428574	chr11:66619002-66804133	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv832194	chr11:66634462-66805980	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
4	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
5	esv1817552	chr11:66751014-66839985	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66772600-66776400	Weak transcription	Liver	Liver
2	chr11:66774400-66782600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:66774400-66782800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:66774600-66777400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:66774600-66782600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr11:66774600-66782600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:66774600-66783000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:66774600-66783000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:66774600-66784000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:66774800-66780400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr11:66774800-66782800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:66774800-66782800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:66774800-66789000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:66775800-66777600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:66776000-66776600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:66776200-66776600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links