Variant report
| Variant | rs60523317 |
|---|---|
| Chromosome Location | chr11:66758860-66758861 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:66753318..66755986-chr11:66757974..66761655,4 | MCF-7 | breast: | |
| 2 | chr11:66757900..66759459-chr11:66762898..66764966,2 | MCF-7 | breast: | |
| 3 | chr11:66749347..66751638-chr11:66758064..66759874,2 | K562 | blood: | |
| 4 | chr11:66749751..66751593-chr11:66758216..66761175,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000252709 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs11538048 | 1.00[AMR][1000 genomes] |
| rs55962689 | 1.00[AMR][1000 genomes] |
| rs56049904 | 1.00[AMR][1000 genomes] |
| rs56194916 | 1.00[AMR][1000 genomes] |
| rs56705397 | 1.00[AMR][1000 genomes] |
| rs56728386 | 1.00[AMR][1000 genomes] |
| rs57237794 | 1.00[AMR][1000 genomes] |
| rs57241231 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57508396 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57550064 | 1.00[AMR][1000 genomes] |
| rs57630565 | 1.00[AMR][1000 genomes] |
| rs58201175 | 1.00[AMR][1000 genomes] |
| rs59663951 | 1.00[AMR][1000 genomes] |
| rs59868470 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv555226 | chr11:66579572-66845362 | Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 74 gene(s) | inside rSNPs | diseases |
| 2 | nsv428574 | chr11:66619002-66804133 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 50 gene(s) | inside rSNPs | diseases |
| 3 | nsv832194 | chr11:66634462-66805980 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 33 gene(s) | inside rSNPs | diseases |
| 4 | nsv531397 | chr11:66653381-67465721 | Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 271 gene(s) | inside rSNPs | diseases |
| 5 | esv1817552 | chr11:66751014-66839985 | Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 23 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:66754000-66764000 | Weak transcription | Right Atrium | heart |
| 2 | chr11:66755600-66764400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
