Variant report

Variant	rs567342955
Chromosome Location	chr9:86432135-86432136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:86430622..86432919-chr9:86535075..86537489,2	MCF-7	breast:
2	chr9:86321555..86324208-chr9:86431445..86433817,2	MCF-7	breast:
3	chr9:86321469..86324662-chr9:86431245..86433854,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165115	Chromatin interaction
ENSG00000254473	Chromatin interaction
ENSG00000135018	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893513	chr9:86298632-86433459	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv469859	chr9:86398152-86587957	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv482641	chr9:86398152-86587957	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	esv2761538	chr9:86401015-86451943	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv2758192	chr9:86414024-86603602	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
6	esv2759701	chr9:86414024-86603602	Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
7	nsv982312	chr9:86424154-86490046	Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	esv3331113	chr9:86431782-86433830	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86431000-86433000	Active TSS	A549	lung
2	chr9:86431000-86433200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr9:86431000-86433200	Active TSS	Aorta	Aorta
4	chr9:86431000-86433200	Active TSS	GM12878-XiMat	blood
5	chr9:86431000-86433200	Active TSS	Hela-S3	cervix
6	chr9:86431200-86433000	Active TSS	NHDF-Ad	bronchial
7	chr9:86431200-86433200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:86431200-86433400	Active TSS	Thymus	Thymus
9	chr9:86431400-86432400	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr9:86431400-86433000	Active TSS	NHLF	lung
11	chr9:86431400-86433200	Active TSS	Fetal Muscle Leg	muscle
12	chr9:86431400-86433200	Active TSS	HepG2	liver
13	chr9:86431400-86433400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:86431400-86433400	Active TSS	Cortex derived primary cultured neurospheres	brain
15	chr9:86431400-86433400	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr9:86431600-86432200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
17	chr9:86431600-86432200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:86431600-86432200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:86431600-86432800	Active TSS	Muscle Satellite Cultured Cells	--
20	chr9:86431600-86433000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:86431600-86433000	Active TSS	Primary T cells fromperipheralblood	blood
22	chr9:86431600-86433000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
23	chr9:86431600-86433000	Active TSS	Primary T killer memory cells from peripheral blood	blood
24	chr9:86431600-86433000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:86431600-86433000	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr9:86431600-86433000	Active TSS	Fetal Muscle Trunk	muscle
27	chr9:86431600-86433000	Active TSS	Fetal Thymus	thymus
28	chr9:86431600-86433000	Active TSS	NH-A	brain
29	chr9:86431600-86433000	Active TSS	NHEK	skin
30	chr9:86431600-86433000	Active TSS	Osteobl	bone
31	chr9:86431600-86433200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr9:86431600-86433200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr9:86431600-86433200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr9:86431600-86433200	Active TSS	Brain Anterior Caudate	brain
35	chr9:86431600-86433200	Active TSS	Duodenum Smooth Muscle	Duodenum
36	chr9:86431600-86433200	Active TSS	Fetal Intestine Large	intestine
37	chr9:86431600-86433200	Active TSS	Fetal Stomach	stomach
38	chr9:86431600-86433200	Active TSS	Ovary	ovary
39	chr9:86431600-86433200	Active TSS	Psoas Muscle	Psoas
40	chr9:86431600-86433200	Active TSS	Rectal Smooth Muscle	rectum
41	chr9:86431600-86433200	Active TSS	Right Atrium	heart
42	chr9:86431600-86433200	Active TSS	Right Ventricle	heart
43	chr9:86431600-86433200	Active TSS	K562	blood
44	chr9:86431600-86433400	Active TSS	H1 Cell Line	embryonic stem cell
45	chr9:86431600-86433400	Active TSS	HUES48 Cell Line	embryonic stem cell
46	chr9:86431600-86433400	Active TSS	Breast Myoepithelial Primary Cells	Breast
47	chr9:86431600-86433400	Active TSS	Colonic Mucosa	Colon
48	chr9:86431600-86433400	Active TSS	Rectal Mucosa Donor 29	rectum
49	chr9:86431600-86433400	Active TSS	HSMMtube	muscle
50	chr9:86431600-86433800	Active TSS	Stomach Smooth Muscle	stomach

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