Variant report

Variant	rs56754969
Chromosome Location	chr1:169746164-169746165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16862664	1.00[AMR][1000 genomes]
rs16862670	1.00[AMR][1000 genomes]
rs2420508	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987380	1.00[AMR][1000 genomes]
rs57495548	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57768780	1.00[AMR][1000 genomes]
rs59690633	1.00[AMR][1000 genomes]
rs60995261	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61411269	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169735400-169749000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:169745000-169748800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr1:169745000-169749000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:169745200-169749200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr1:169745800-169749000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:169746000-169746400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:169746000-169746400	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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