Variant report

Variant	rs16862664
Chromosome Location	chr1:169713594-169713595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16862670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2420508	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs3917418	0.81[AFR][1000 genomes]
rs3917420	0.81[AFR][1000 genomes]
rs3917426	0.81[AFR][1000 genomes]
rs3917442	0.81[AFR][1000 genomes]
rs3917446	0.81[AFR][1000 genomes]
rs4987380	1.00[AMR][1000 genomes]
rs5366	0.81[AFR][1000 genomes]
rs56754969	1.00[AMR][1000 genomes]
rs57495548	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57768780	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59690633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60423192	1.00[AFR][1000 genomes]
rs60995261	1.00[AMR][1000 genomes]
rs61411269	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169708800-169713800	Weak transcription	Left Ventricle	heart
2	chr1:169710400-169713800	Weak transcription	HUVEC	blood vessel
3	chr1:169710600-169713800	Weak transcription	Liver	Liver
4	chr1:169711000-169714200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:169711000-169714200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:169711000-169714200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:169711000-169714600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:169711200-169714600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:169711200-169714600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr1:169711400-169714400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr1:169711600-169713800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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