Variant report

Variant	rs3917446
Chromosome Location	chr1:169691316-169691317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16862664	0.81[AFR][1000 genomes]
rs16862670	0.81[AFR][1000 genomes]
rs35984232	1.00[AMR][1000 genomes]
rs3917418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3917420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3917426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3917442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987277	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987283	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987286	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987296	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987300	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987303	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987316	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987331	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57768780	1.00[AFR][1000 genomes]
rs59690633	0.81[AFR][1000 genomes]
rs60423192	0.81[AFR][1000 genomes]
rs61734335	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv872541	chr1:169672360-169695815	Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169681200-169692000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:169690800-169691400	Enhancers	Dnd41	blood
3	chr1:169691200-169691600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:169691200-169692800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:169691200-169692800	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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