Variant report

Variant	rs16862670
Chromosome Location	chr1:169714473-169714474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16862664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2420508	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs3917418	0.81[AFR][1000 genomes]
rs3917420	0.81[AFR][1000 genomes]
rs3917426	0.81[AFR][1000 genomes]
rs3917442	0.81[AFR][1000 genomes]
rs3917446	0.81[AFR][1000 genomes]
rs4987380	1.00[AMR][1000 genomes]
rs5366	0.81[AFR][1000 genomes]
rs56754969	1.00[AMR][1000 genomes]
rs57495548	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57768780	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59690633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60423192	1.00[AFR][1000 genomes]
rs60995261	1.00[AMR][1000 genomes]
rs61411269	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169711000-169714600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:169711200-169714600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr1:169711200-169714600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:169713800-169715200	Enhancers	HUVEC	blood vessel
5	chr1:169714000-169714600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:169714200-169715000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr1:169714200-169715200	Flanking Active TSS	HepG2	liver
8	chr1:169714200-169715600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr1:169714200-169715800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr1:169714200-169715800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr1:169714200-169715800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr1:169714200-169715800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:169714200-169716200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:169714400-169714600	Enhancers	NH-A	brain
15	chr1:169714400-169714800	Active TSS	Liver	Liver
16	chr1:169714400-169715200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:169714400-169715800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:169714400-169715800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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