Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169695880..169697994-chr1:169699455..169701036,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16862664	0.81[AFR][1000 genomes]
rs16862670	0.81[AFR][1000 genomes]
rs35984232	1.00[AMR][1000 genomes]
rs3917418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3917420	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3917442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3917446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987277	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987283	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987286	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987296	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987300	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987303	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987316	1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987331	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987382	1.00[MEX][hapmap]
rs5366	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57768780	1.00[AFR][1000 genomes]
rs59690633	0.81[AFR][1000 genomes]
rs60423192	0.81[AFR][1000 genomes]
rs61734335	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169691600-169698400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:169691800-169698200	Weak transcription	Left Ventricle	heart
3	chr1:169694600-169696600	Flanking Active TSS	Liver	Liver
4	chr1:169695800-169696400	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr1:169695800-169696600	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr1:169695800-169697000	Enhancers	Stomach Mucosa	stomach
7	chr1:169696200-169696600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
8	chr1:169696200-169697000	Bivalent Enhancer	HepG2	liver

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