Variant report

Variant	rs56757293
Chromosome Location	chr7:137187069-137187070
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10429242	1.00[AMR][1000 genomes]
rs1609249	1.00[AMR][1000 genomes]
rs57437520	1.00[AMR][1000 genomes]
rs58529038	1.00[AMR][1000 genomes]
rs58688605	1.00[AMR][1000 genomes]
rs61051125	1.00[AMR][1000 genomes]
rs6958415	1.00[AMR][1000 genomes]
rs706571	1.00[AMR][1000 genomes]
rs7802675	1.00[AMR][1000 genomes]
rs7808760	1.00[AMR][1000 genomes]
rs834449	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137148600-137206400	Weak transcription	Aorta	Aorta
2	chr7:137167800-137192800	Weak transcription	Osteobl	bone
3	chr7:137170200-137193000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr7:137179400-137193200	Weak transcription	HSMM	muscle
5	chr7:137180200-137187400	Weak transcription	HSMMtube	muscle
6	chr7:137183000-137193200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:137184200-137193200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:137185800-137188400	Weak transcription	Brain Angular Gyrus	brain
9	chr7:137186200-137187200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:137186800-137187200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:137186800-137187800	Enhancers	NHDF-Ad	bronchial
12	chr7:137187000-137187200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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