Variant report

Variant	rs7808760
Chromosome Location	chr7:137164567-137164568
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10429242	1.00[AMR][1000 genomes]
rs1609249	1.00[AMR][1000 genomes]
rs56757293	1.00[AMR][1000 genomes]
rs57437520	1.00[AMR][1000 genomes]
rs58529038	1.00[AMR][1000 genomes]
rs58688605	1.00[AMR][1000 genomes]
rs61051125	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs706571	1.00[AMR][1000 genomes]
rs7802675	1.00[AMR][1000 genomes]
rs834449	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv520950	chr7:137154572-137167984	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137139800-137165000	Weak transcription	Fetal Brain Female	brain
2	chr7:137148600-137206400	Weak transcription	Aorta	Aorta
3	chr7:137152000-137179400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:137162000-137167400	Weak transcription	NH-A	brain
5	chr7:137162000-137179000	Weak transcription	HSMM	muscle
6	chr7:137162000-137179000	Weak transcription	HSMMtube	muscle
7	chr7:137162200-137167200	Weak transcription	Osteobl	bone
8	chr7:137162200-137169000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr7:137162400-137167400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:137163600-137179000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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