Variant report

Variant	rs57437520
Chromosome Location	chr7:137261551-137261552
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10429242	1.00[AMR][1000 genomes]
rs1609249	1.00[AMR][1000 genomes]
rs56757293	1.00[AMR][1000 genomes]
rs58529038	1.00[AMR][1000 genomes]
rs58688605	1.00[AMR][1000 genomes]
rs59070863	0.86[AFR][1000 genomes]
rs61051125	1.00[AMR][1000 genomes]
rs6958415	1.00[AMR][1000 genomes]
rs6967718	1.00[AMR][1000 genomes]
rs706571	1.00[AMR][1000 genomes]
rs7802675	1.00[AMR][1000 genomes]
rs7808760	1.00[AMR][1000 genomes]
rs834449	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137215400-137275400	Weak transcription	Brain Angular Gyrus	brain
2	chr7:137224400-137274800	Weak transcription	HSMMtube	muscle
3	chr7:137224800-137262400	Weak transcription	HSMM	muscle
4	chr7:137237200-137264000	Weak transcription	NH-A	brain
5	chr7:137237400-137277800	Weak transcription	Aorta	Aorta
6	chr7:137249400-137262800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:137249800-137265000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:137251000-137264600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:137253400-137261600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:137255000-137274800	Weak transcription	Brain Anterior Caudate	brain
11	chr7:137256200-137261800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr7:137257400-137264400	Weak transcription	NHDF-Ad	bronchial
13	chr7:137257600-137262400	Weak transcription	Osteobl	bone
14	chr7:137257600-137262600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:137257600-137264400	Weak transcription	Fetal Heart	heart
16	chr7:137259600-137264200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:137260000-137262000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:137260400-137274200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:137261000-137261800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:137261000-137261800	Enhancers	NHEK	skin
21	chr7:137261000-137262000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr7:137261000-137264400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr7:137261200-137262400	Enhancers	HMEC	breast
24	chr7:137261400-137262000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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