Variant report

Variant	rs56765616
Chromosome Location	chr6:39018846-39018847
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:39016643..39019473-chr6:39022041..39023583,2	K562	blood:
2	chr6:39014216..39015762-chr6:39017423..39020213,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10305417	0.94[AFR][1000 genomes]
rs55643263	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55650855	0.94[AFR][1000 genomes]
rs55714548	1.00[AMR][1000 genomes]
rs58092834	1.00[AMR][1000 genomes]
rs59648883	0.87[AMR][1000 genomes]
rs60160720	0.83[AFR][1000 genomes]
rs60702678	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412424	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412493	1.00[AMR][1000 genomes]
rs73414403	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv885821	chr6:38843970-39039503	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv948357	chr6:38920998-39035836	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1027064	chr6:38984374-39034516	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv1801734	chr6:38986164-39034484	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39016000-39020000	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr6:39017200-39030200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:39017400-39019200	Weak transcription	Right Atrium	heart
4	chr6:39017400-39019800	Flanking Active TSS	Fetal Heart	heart
5	chr6:39017400-39020200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:39017800-39019200	Enhancers	Dnd41	blood
7	chr6:39017800-39020400	Enhancers	HMEC	breast
8	chr6:39017800-39020600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:39017800-39021000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:39017800-39026400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:39018200-39019200	Weak transcription	Right Ventricle	heart
12	chr6:39018200-39019400	Enhancers	Left Ventricle	heart
13	chr6:39018200-39020000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:39018400-39019600	Enhancers	NHEK	skin
15	chr6:39018800-39019000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
16	chr6:39018800-39019200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:39018800-39020000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:39018800-39020000	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr6:39018800-39020000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:39018800-39020400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:39018800-39023400	Enhancers	Pancreas	Pancrea

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