Variant report

Variant	rs56768853
Chromosome Location	chr7:150321958-150321959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs57951791	1.00[AFR][1000 genomes]
rs58669910	1.00[AFR][1000 genomes]
rs58992715	1.00[AFR][1000 genomes]
rs59096542	1.00[AFR][1000 genomes]
rs59875635	1.00[AFR][1000 genomes]
rs61508304	1.00[AFR][1000 genomes]
rs73727355	1.00[AFR][1000 genomes]
rs73727360	1.00[AFR][1000 genomes]
rs73727361	1.00[AFR][1000 genomes]
rs73727363	1.00[AFR][1000 genomes]
rs73727365	1.00[AFR][1000 genomes]
rs73727366	1.00[AFR][1000 genomes]
rs73727367	1.00[AFR][1000 genomes]
rs73727368	1.00[AFR][1000 genomes]
rs73727369	1.00[AFR][1000 genomes]
rs73727370	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	esv2758617	chr7:150251949-150463804	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv2759573	chr7:150251949-150463804	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv3388935	chr7:150301204-150374532	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	esv2762711	chr7:150318801-150323647	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150312800-150323000	Weak transcription	Fetal Thymus	thymus
2	chr7:150315000-150322200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr7:150318000-150322400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr7:150318000-150323000	Weak transcription	HUVEC	blood vessel
5	chr7:150318400-150323200	Weak transcription	Spleen	Spleen
6	chr7:150318800-150322200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr7:150318800-150323000	Weak transcription	Adipose Nuclei	Adipose
8	chr7:150318800-150323200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr7:150319000-150323000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr7:150319200-150323800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr7:150320000-150323200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:150320400-150322600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
13	chr7:150320400-150322800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr7:150320400-150323200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr7:150320400-150324400	Weak transcription	Gastric	stomach
16	chr7:150320600-150322200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr7:150320600-150323400	Weak transcription	Thymus	Thymus
18	chr7:150320600-150324400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr7:150320800-150323600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr7:150321000-150323600	Genic enhancers	GM12878-XiMat	blood
21	chr7:150321200-150323600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr7:150321600-150322000	Enhancers	Left Ventricle	heart
23	chr7:150321600-150322200	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr7:150321600-150322400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
25	chr7:150321600-150323000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr7:150321800-150322200	Weak transcription	Primary T cells from cord blood	blood
27	chr7:150321800-150322400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr7:150321800-150323000	Strong transcription	Dnd41	blood
29	chr7:150321800-150323200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr7:150321800-150324600	Weak transcription	Fetal Stomach	stomach
31	chr7:150321800-150326800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood

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