Variant report

Variant	rs73727368
Chromosome Location	chr7:150329312-150329313
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56768853	1.00[AFR][1000 genomes]
rs57951791	1.00[AFR][1000 genomes]
rs58669910	1.00[AFR][1000 genomes]
rs58992715	1.00[AFR][1000 genomes]
rs59096542	1.00[AFR][1000 genomes]
rs59875635	1.00[AFR][1000 genomes]
rs61508304	1.00[AFR][1000 genomes]
rs73727355	1.00[AFR][1000 genomes]
rs73727360	1.00[AFR][1000 genomes]
rs73727361	1.00[AFR][1000 genomes]
rs73727363	1.00[AFR][1000 genomes]
rs73727365	1.00[AFR][1000 genomes]
rs73727366	1.00[AFR][1000 genomes]
rs73727367	1.00[AFR][1000 genomes]
rs73727369	1.00[AFR][1000 genomes]
rs73727370	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	esv2758617	chr7:150251949-150463804	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv2759573	chr7:150251949-150463804	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv3388935	chr7:150301204-150374532	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
10	nsv831187	chr7:150325913-150503500	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150327400-150329400	Active TSS	Stomach Smooth Muscle	stomach
2	chr7:150327400-150329800	Active TSS	Duodenum Mucosa	Duodenum
3	chr7:150327600-150329600	Active TSS	Placenta	Placenta
4	chr7:150327600-150329800	Active TSS	Esophagus	oesophagus
5	chr7:150327600-150329800	Active TSS	Rectal Smooth Muscle	rectum
6	chr7:150327600-150330000	Active TSS	Brain Hippocampus Middle	brain
7	chr7:150327600-150330000	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr7:150327600-150330000	Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr7:150327600-150330000	Flanking Active TSS	HUVEC	blood vessel
10	chr7:150327800-150329400	Active TSS	Pancreas	Pancrea
11	chr7:150327800-150329600	Active TSS	Liver	Liver
12	chr7:150327800-150329600	Active TSS	Lung	lung
13	chr7:150327800-150329800	Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr7:150327800-150330000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
15	chr7:150327800-150330000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr7:150327800-150330000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
17	chr7:150327800-150330000	Active TSS	Right Atrium	heart
18	chr7:150327800-150330200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:150328000-150329400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr7:150328000-150329400	Active TSS	Rectal Mucosa Donor 31	rectum
21	chr7:150328000-150329600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
22	chr7:150328000-150329600	Active TSS	Primary T killer memory cells from peripheral blood	blood
23	chr7:150328000-150329600	Active TSS	Adipose Nuclei	Adipose
24	chr7:150328000-150329600	Active TSS	Fetal Muscle Trunk	muscle
25	chr7:150328000-150329800	Active TSS	Brain Anterior Caudate	brain
26	chr7:150328000-150329800	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr7:150328000-150329800	Active TSS	Fetal Muscle Leg	muscle
28	chr7:150328000-150329800	Active TSS	Sigmoid Colon	Sigmoid Colon
29	chr7:150328000-150330000	Active TSS	Primary T cells fromperipheralblood	blood
30	chr7:150328000-150330000	Flanking Active TSS	Primary hematopoietic stem cells	blood
31	chr7:150328000-150330000	Active TSS	Psoas Muscle	Psoas
32	chr7:150328200-150329400	Active TSS	Brain Substantia Nigra	brain
33	chr7:150328200-150329400	Active TSS	Colonic Mucosa	Colon
34	chr7:150328200-150329400	Active TSS	Colon Smooth Muscle	Colon
35	chr7:150328200-150329400	Active TSS	Fetal Intestine Large	intestine
36	chr7:150328200-150329600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
37	chr7:150328200-150329600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
38	chr7:150328200-150329600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr7:150328200-150329600	Active TSS	Fetal Stomach	stomach
40	chr7:150328200-150329800	Active TSS	Left Ventricle	heart
41	chr7:150328200-150329800	Active TSS	GM12878-XiMat	blood
42	chr7:150328200-150330200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
43	chr7:150328400-150329400	Active TSS	Brain Cingulate Gyrus	brain
44	chr7:150328400-150329400	Active TSS	Brain Inferior Temporal Lobe	brain
45	chr7:150328400-150329400	Active TSS	Pancreatic Islets	Pancreatic Islet
46	chr7:150328400-150329400	Active TSS	Monocytes-CD14+_RO01746	blood
47	chr7:150328400-150329800	Active TSS	Fetal Intestine Small	intestine
48	chr7:150328400-150329800	Active TSS	Right Ventricle	heart
49	chr7:150328400-150329800	Active TSS	Small Intestine	intestine
50	chr7:150328600-150329400	Active TSS	Primary monocytes fromperipheralblood	blood

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