Variant report

Variant	rs73727365
Chromosome Location	chr7:150326260-150326261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56768853	1.00[AFR][1000 genomes]
rs57951791	1.00[AFR][1000 genomes]
rs58669910	1.00[AFR][1000 genomes]
rs58992715	1.00[AFR][1000 genomes]
rs59096542	1.00[AFR][1000 genomes]
rs59875635	1.00[AFR][1000 genomes]
rs61508304	1.00[AFR][1000 genomes]
rs73727355	1.00[AFR][1000 genomes]
rs73727360	1.00[AFR][1000 genomes]
rs73727361	1.00[AFR][1000 genomes]
rs73727363	1.00[AFR][1000 genomes]
rs73727366	1.00[AFR][1000 genomes]
rs73727367	1.00[AFR][1000 genomes]
rs73727368	1.00[AFR][1000 genomes]
rs73727369	1.00[AFR][1000 genomes]
rs73727370	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	esv2758617	chr7:150251949-150463804	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv2759573	chr7:150251949-150463804	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv3388935	chr7:150301204-150374532	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
10	nsv831187	chr7:150325913-150503500	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150321800-150326800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
2	chr7:150322200-150328400	Weak transcription	Fetal Intestine Small	intestine
3	chr7:150322600-150326800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
4	chr7:150323200-150327200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr7:150323200-150327400	Genic enhancers	Primary T cells fromperipheralblood	blood
6	chr7:150323200-150327400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
7	chr7:150323200-150327600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr7:150323200-150327600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr7:150323200-150327800	Genic enhancers	Spleen	Spleen
10	chr7:150323400-150327600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:150323400-150327600	Genic enhancers	Primary monocytes fromperipheralblood	blood
12	chr7:150323400-150327600	Strong transcription	Thymus	Thymus
13	chr7:150323400-150327800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr7:150323400-150328200	Weak transcription	Brain Substantia Nigra	brain
15	chr7:150323600-150327200	Genic enhancers	Adipose Nuclei	Adipose
16	chr7:150323600-150327400	Enhancers	Right Atrium	heart
17	chr7:150323600-150328000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
18	chr7:150323800-150326400	Genic enhancers	Left Ventricle	heart
19	chr7:150323800-150328000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr7:150323800-150328400	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr7:150324000-150326400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr7:150324000-150326400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
23	chr7:150324000-150327600	Transcr. at gene 5' and 3'	Primary T cells from cord blood	blood
24	chr7:150324000-150327600	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr7:150324000-150329200	Transcr. at gene 5' and 3'	Dnd41	blood
26	chr7:150324400-150327000	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr7:150324600-150326400	ZNF genes & repeats	Fetal Stomach	stomach
28	chr7:150324600-150327000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
29	chr7:150324800-150326400	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr7:150324800-150326400	Genic enhancers	Placenta	Placenta
31	chr7:150324800-150327600	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr7:150325000-150327000	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr7:150325000-150328200	Weak transcription	Colonic Mucosa	Colon
34	chr7:150325200-150326600	Weak transcription	Fetal Muscle Leg	muscle
35	chr7:150325400-150326400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr7:150325400-150327200	Strong transcription	Primary hematopoietic stem cells	blood
37	chr7:150325400-150327800	Weak transcription	Pancreas	Pancrea
38	chr7:150325600-150326400	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr7:150325600-150326600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr7:150325600-150327600	Weak transcription	Gastric	stomach
41	chr7:150325600-150328400	Enhancers	Right Ventricle	heart
42	chr7:150326000-150326600	Flanking Active TSS	Fetal Heart	heart
43	chr7:150326000-150326800	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
44	chr7:150326000-150327000	Genic enhancers	HUVEC	blood vessel
45	chr7:150326000-150327400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr7:150326200-150326600	Weak transcription	Fetal Muscle Trunk	muscle
47	chr7:150326200-150326800	Strong transcription	Fetal Thymus	thymus
48	chr7:150326200-150326800	Strong transcription	Lung	lung
49	chr7:150326200-150327400	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr7:150326200-150327400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links