Variant report

Variant	rs56771910
Chromosome Location	chr1:92957954-92957955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2391176	1.00[AMR][1000 genomes]
rs59590952	1.00[AMR][1000 genomes]
rs72962652	1.00[AMR][1000 genomes]
rs72962656	1.00[AFR][1000 genomes]
rs72962657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72962669	1.00[AFR][1000 genomes]
rs72962677	1.00[AFR][1000 genomes]
rs72964704	1.00[AMR][1000 genomes]
rs72964707	1.00[AMR][1000 genomes]
rs72964725	1.00[AFR][1000 genomes]
rs72964727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964748	1.00[AFR][1000 genomes]
rs72964760	1.00[AFR][1000 genomes]
rs72966719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72966728	1.00[AMR][1000 genomes]
rs72966745	0.83[AFR][1000 genomes]
rs72966760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72966784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72966791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968836	1.00[AMR][1000 genomes]
rs72970627	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523354	chr1:92931263-93064823	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92952800-92991400	Weak transcription	Pancreas	Pancrea
2	chr1:92953200-92960400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr1:92954000-92960200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr1:92954000-92960400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr1:92954200-92960000	Weak transcription	Fetal Thymus	thymus
6	chr1:92955000-92959400	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr1:92955600-92960000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:92956400-92960000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr1:92956400-92960000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr1:92956400-92960000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr1:92956400-92960000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr1:92956400-92960400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr1:92956600-92959400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr1:92957000-92960400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr1:92957400-92960000	Weak transcription	Primary T cells from cord blood	blood
16	chr1:92957800-92958200	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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