Variant report

Variant	rs72968836
Chromosome Location	chr1:93175853-93175854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:93175208..93177703-chr1:93227101..93229847,2	K562	blood:
2	chr1:93175257..93178526-chr1:93178760..93181629,3	K562	blood:
3	chr1:93168714..93171281-chr1:93175586..93177919,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs2391176	1.00[AMR][1000 genomes]
rs56771910	1.00[AMR][1000 genomes]
rs59590952	1.00[AMR][1000 genomes]
rs60815312	1.00[AMR][1000 genomes]
rs72956029	1.00[AMR][1000 genomes]
rs72956041	1.00[AMR][1000 genomes]
rs72956069	1.00[AMR][1000 genomes]
rs72962652	1.00[AMR][1000 genomes]
rs72962657	1.00[AMR][1000 genomes]
rs72964704	1.00[AMR][1000 genomes]
rs72964707	1.00[AMR][1000 genomes]
rs72964727	1.00[AMR][1000 genomes]
rs72966172	1.00[AMR][1000 genomes]
rs72966196	1.00[AMR][1000 genomes]
rs72966719	1.00[AMR][1000 genomes]
rs72966728	1.00[AMR][1000 genomes]
rs72966760	1.00[AMR][1000 genomes]
rs72966784	1.00[AMR][1000 genomes]
rs72966791	1.00[AMR][1000 genomes]
rs72968037	1.00[AMR][1000 genomes]
rs72968083	1.00[AMR][1000 genomes]
rs72968088	1.00[AMR][1000 genomes]
rs72970627	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72970638	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794348	chr1:93090476-93192932	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1802611	chr1:93090476-93219907	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv997898	chr1:93167128-93228156	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93098400-93205400	Weak transcription	NHLF	lung
2	chr1:93123400-93176200	Weak transcription	Psoas Muscle	Psoas
3	chr1:93123600-93178800	Weak transcription	Aorta	Aorta
4	chr1:93123600-93213400	Weak transcription	Gastric	stomach
5	chr1:93155800-93213400	Weak transcription	Lung	lung
6	chr1:93160800-93177000	Weak transcription	Ovary	ovary
7	chr1:93161000-93176800	Weak transcription	Colon Smooth Muscle	Colon
8	chr1:93161000-93197400	Weak transcription	Primary B cells from cord blood	blood
9	chr1:93161000-93197800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr1:93161000-93199000	Weak transcription	Left Ventricle	heart
11	chr1:93163800-93177400	Weak transcription	Placenta	Placenta
12	chr1:93163800-93190000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:93167600-93177800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr1:93170200-93189800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr1:93171400-93177400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:93173400-93177800	Enhancers	K562	blood
17	chr1:93174200-93177000	Enhancers	Liver	Liver
18	chr1:93174400-93202000	Weak transcription	Fetal Heart	heart
19	chr1:93174800-93176200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr1:93175200-93176000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr1:93175200-93176000	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr1:93175200-93176000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:93175200-93176000	Enhancers	Muscle Satellite Cultured Cells	--
24	chr1:93175200-93176000	Enhancers	HSMM	muscle
25	chr1:93175200-93176000	Enhancers	NH-A	brain
26	chr1:93175200-93176000	Enhancers	Osteobl	bone
27	chr1:93175200-93176200	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr1:93175200-93177800	Enhancers	Fetal Intestine Large	intestine
29	chr1:93175200-93178000	Enhancers	HepG2	liver
30	chr1:93175200-93178400	Enhancers	Fetal Intestine Small	intestine
31	chr1:93175400-93176000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr1:93175400-93176000	Enhancers	HSMMtube	muscle
33	chr1:93175400-93176400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr1:93175400-93177600	Enhancers	Pancreas	Pancrea
35	chr1:93175600-93176000	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr1:93175600-93176000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr1:93175600-93176000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr1:93175600-93177800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr1:93175600-93177800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr1:93175600-93179400	Weak transcription	A549	lung
41	chr1:93175600-93180000	Weak transcription	Stomach Mucosa	stomach
42	chr1:93175800-93176000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr1:93175800-93190200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr1:93175800-93199400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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