The 2.0 version of rSNPBase

Variant report

Variant rs56774527
Chromosome Location chr1:67488821-67488822
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:67449400-67501800 Weak transcription Placenta Amnion Placenta Amnion
2 chr1:67451200-67506200 Weak transcription Hela-S3 cervix
3 chr1:67455200-67495000 Weak transcription Small Intestine intestine
4 chr1:67455400-67509400 Weak transcription Spleen Spleen
5 chr1:67462400-67508400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr1:67465200-67502400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
7 chr1:67465200-67506400 Weak transcription Primary T killer memory cells from peripheral blood blood
8 chr1:67468600-67501800 Weak transcription Psoas Muscle Psoas
9 chr1:67470800-67505400 Weak transcription Gastric stomach
10 chr1:67471800-67503800 Weak transcription Brain Substantia Nigra brain
11 chr1:67472400-67502400 Weak transcription Fetal Brain Male brain
12 chr1:67473800-67518000 Weak transcription A549 lung
13 chr1:67474600-67500800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
14 chr1:67476000-67504600 Weak transcription Lung lung
15 chr1:67476000-67508400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr1:67478000-67508800 Weak transcription Colonic Mucosa Colon
17 chr1:67479800-67503200 Weak transcription K562 blood
18 chr1:67480800-67489200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr1:67481000-67490600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
20 chr1:67482600-67491000 Strong transcription Primary T cells from cord blood blood
21 chr1:67482600-67498800 Strong transcription Fetal Intestine Large intestine
22 chr1:67483200-67489000 Strong transcription Primary B cells from cord blood blood
23 chr1:67484000-67489000 Strong transcription Primary T helper naive cells fromperipheralblood blood
24 chr1:67484000-67490800 Strong transcription Sigmoid Colon Sigmoid Colon
25 chr1:67484000-67518400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
26 chr1:67484200-67489200 Strong transcription Fetal Lung lung
27 chr1:67484600-67490400 Weak transcription Skeletal Muscle Male skeletal muscle
28 chr1:67484800-67501800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
29 chr1:67485400-67490400 Weak transcription Pancreas Pancrea
30 chr1:67485400-67503600 Weak transcription Ovary ovary
31 chr1:67485400-67504000 Weak transcription Brain Anterior Caudate brain
32 chr1:67485400-67505800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
33 chr1:67485600-67489800 Weak transcription Brain Hippocampus Middle brain
34 chr1:67485600-67503000 Weak transcription Placenta Placenta
35 chr1:67485800-67490000 Weak transcription HSMMtube muscle
36 chr1:67485800-67490400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr1:67485800-67503000 Weak transcription Primary T helper naive cells from peripheral blood blood
38 chr1:67485800-67504600 Weak transcription iPS-18 Cell Line embryonic stem cell
39 chr1:67485800-67506200 Weak transcription Brain Inferior Temporal Lobe brain
40 chr1:67485800-67507600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
41 chr1:67486000-67489200 Weak transcription Fetal Intestine Small intestine
42 chr1:67486000-67501600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr1:67486000-67509600 Weak transcription HUES64 Cell Line embryonic stem cell
44 chr1:67486200-67516800 Weak transcription NHEK skin
45 chr1:67486600-67489000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr1:67486600-67494800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
47 chr1:67486600-67500400 Weak transcription GM12878-XiMat blood
48 chr1:67486600-67501800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
49 chr1:67486600-67501800 Weak transcription Fetal Kidney kidney
50 chr1:67486600-67502000 Weak transcription Brain Germinal Matrix brain

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Last update: Aug 31, 2015