The 2.0 version of rSNPBase

Variant report

Variant rs17129592
Chromosome Location chr1:67473318-67473319
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:113 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:67441600-67485200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
2 chr1:67445400-67483800 Weak transcription ES-I3 Cell Line embryonic stem cell
3 chr1:67448800-67484200 Weak transcription Brain Cingulate Gyrus brain
4 chr1:67449400-67501800 Weak transcription Placenta Amnion Placenta Amnion
5 chr1:67449800-67475600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr1:67450600-67485200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
7 chr1:67451200-67506200 Weak transcription Hela-S3 cervix
8 chr1:67453200-67484000 Weak transcription iPS-20b Cell Line embryonic stem cell
9 chr1:67454800-67483200 Weak transcription HUES6 Cell Line embryonic stem cell
10 chr1:67454800-67484200 Weak transcription NHDF-Ad bronchial
11 chr1:67455000-67484000 Weak transcription HUES64 Cell Line embryonic stem cell
12 chr1:67455000-67484200 Weak transcription GM12878-XiMat blood
13 chr1:67455200-67495000 Weak transcription Small Intestine intestine
14 chr1:67455400-67509400 Weak transcription Spleen Spleen
15 chr1:67455600-67484200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
16 chr1:67455800-67478200 Strong transcription Liver Liver
17 chr1:67455800-67485600 Weak transcription HMEC breast
18 chr1:67456200-67475600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr1:67456400-67484800 Weak transcription HUVEC blood vessel
20 chr1:67460000-67485200 Weak transcription Esophagus oesophagus
21 chr1:67461200-67478600 Strong transcription Rectal Mucosa Donor 31 rectum
22 chr1:67461600-67479200 Strong transcription Fetal Intestine Large intestine
23 chr1:67462000-67474200 Strong transcription Fetal Muscle Trunk muscle
24 chr1:67462000-67478400 Strong transcription Fetal Thymus thymus
25 chr1:67462000-67480400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr1:67462200-67484400 Weak transcription Primary T helper naive cells from peripheral blood blood
27 chr1:67462400-67484200 Weak transcription Ovary ovary
28 chr1:67462400-67508400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
29 chr1:67462600-67479400 Weak transcription NHEK skin
30 chr1:67463800-67476400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr1:67463800-67478000 Strong transcription Duodenum Mucosa Duodenum
32 chr1:67464200-67478000 Strong transcription Breast Myoepithelial Primary Cells Breast
33 chr1:67464200-67478800 Strong transcription Primary B cells from cord blood blood
34 chr1:67465000-67484200 Weak transcription Primary neutrophils fromperipheralblood blood
35 chr1:67465200-67502400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
36 chr1:67465200-67506400 Weak transcription Primary T killer memory cells from peripheral blood blood
37 chr1:67465600-67474200 Weak transcription Primary T helper cells PMA-I stimulated --
38 chr1:67466200-67476000 Strong transcription Dnd41 blood
39 chr1:67466200-67478600 Strong transcription Primary T cells from cord blood blood
40 chr1:67466800-67484200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
41 chr1:67467200-67474200 Weak transcription Placenta Placenta
42 chr1:67467400-67476200 Strong transcription Primary B cells from peripheral blood blood
43 chr1:67468000-67473400 Weak transcription Fetal Kidney kidney
44 chr1:67468000-67478600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr1:67468000-67484400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
46 chr1:67468000-67485600 Weak transcription Aorta Aorta
47 chr1:67468200-67475400 Weak transcription Brain Germinal Matrix brain
48 chr1:67468200-67478000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
49 chr1:67468200-67479400 Weak transcription Rectal Smooth Muscle rectum
50 chr1:67468600-67473800 Strong transcription Primary T cells fromperipheralblood blood

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Last update: Aug 31, 2015