Variant report

Variant	rs12081097
Chromosome Location	chr1:67458372-67458373
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:67455721..67458075-chr1:67458124..67460916,2	K562	blood:
2	chr1:67453034..67455329-chr1:67457170..67460109,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10489633	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1074265	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11208977	0.87[ASN][1000 genomes]
rs11208980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208986	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208987	0.87[ASN][1000 genomes]
rs11208988	0.87[ASN][1000 genomes]
rs11208989	0.87[ASN][1000 genomes]
rs11208990	0.87[ASN][1000 genomes]
rs11208993	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12059957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060891	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12061148	0.87[ASN][1000 genomes]
rs12062086	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12069383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12070382	0.95[ASN][1000 genomes]
rs12073258	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12074407	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12078209	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12079643	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12082330	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12082503	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12090955	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12091194	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17097312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17129589	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17129592	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17129595	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17129627	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2985809	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3924795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3924796	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41356950	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4553158	1.00[CHB][hapmap]
rs57476475	0.87[ASN][1000 genomes]
rs58083543	0.87[ASN][1000 genomes]
rs58465390	0.87[ASN][1000 genomes]
rs58717164	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6588226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6588231	0.87[ASN][1000 genomes]
rs6588232	0.87[ASN][1000 genomes]
rs6588234	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6681625	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6689240	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6698599	0.87[ASN][1000 genomes]
rs7517647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7524757	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7537490	1.00[ASW][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7538922	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7547791	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7551021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67396800-67459000	Weak transcription	Esophagus	oesophagus
2	chr1:67400600-67466600	Weak transcription	Aorta	Aorta
3	chr1:67414600-67462000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:67417000-67462000	Weak transcription	Right Ventricle	heart
5	chr1:67420600-67467000	Weak transcription	Gastric	stomach
6	chr1:67430600-67459000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:67432000-67465600	Weak transcription	Pancreas	Pancrea
8	chr1:67432000-67468600	Weak transcription	Lung	lung
9	chr1:67441600-67485200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:67443400-67466800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr1:67445400-67483800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr1:67447200-67467400	Weak transcription	Stomach Mucosa	stomach
13	chr1:67447600-67459600	Strong transcription	HSMM	muscle
14	chr1:67447600-67460000	Strong transcription	Fetal Thymus	thymus
15	chr1:67447600-67466200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr1:67447600-67466600	Weak transcription	Psoas Muscle	Psoas
17	chr1:67447600-67470200	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr1:67447800-67458400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:67448000-67460200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:67448000-67470800	Weak transcription	Brain Angular Gyrus	brain
21	chr1:67448400-67461600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr1:67448800-67462000	Weak transcription	NHEK	skin
23	chr1:67448800-67466800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr1:67448800-67468600	Weak transcription	HSMMtube	muscle
25	chr1:67448800-67470800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr1:67448800-67484200	Weak transcription	Brain Cingulate Gyrus	brain
27	chr1:67449200-67467400	Weak transcription	Fetal Brain Female	brain
28	chr1:67449400-67467000	Weak transcription	K562	blood
29	chr1:67449400-67501800	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr1:67449800-67475600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr1:67450600-67458400	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr1:67450600-67461400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr1:67450600-67461600	Weak transcription	Brain Substantia Nigra	brain
34	chr1:67450600-67464600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr1:67450600-67485200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr1:67450800-67459800	Weak transcription	Fetal Intestine Small	intestine
37	chr1:67450800-67461600	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr1:67450800-67470600	Weak transcription	Brain Anterior Caudate	brain
39	chr1:67451000-67467600	Weak transcription	Brain Hippocampus Middle	brain
40	chr1:67451200-67461400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr1:67451200-67506200	Weak transcription	Hela-S3	cervix
42	chr1:67451400-67460200	Strong transcription	Primary T cells from cord blood	blood
43	chr1:67452400-67461600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr1:67452400-67468400	Weak transcription	NHLF	lung
45	chr1:67452600-67461600	Weak transcription	HepG2	liver
46	chr1:67452600-67462400	Weak transcription	A549	lung
47	chr1:67452800-67471200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr1:67453000-67464600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr1:67453200-67460600	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr1:67453200-67473200	Weak transcription	Colonic Mucosa	Colon

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