The 2.0 version of rSNPBase

Variant report

Variant rs58717164
Chromosome Location chr1:67456578-67456579
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:67396800-67458200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:67396800-67459000 Weak transcription Esophagus oesophagus
3 chr1:67397600-67457600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
4 chr1:67400600-67466600 Weak transcription Aorta Aorta
5 chr1:67414600-67462000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr1:67417000-67462000 Weak transcription Right Ventricle heart
7 chr1:67420600-67467000 Weak transcription Gastric stomach
8 chr1:67430600-67459000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr1:67432000-67465600 Weak transcription Pancreas Pancrea
10 chr1:67432000-67468600 Weak transcription Lung lung
11 chr1:67433200-67456600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr1:67436600-67457000 Strong transcription NH-A brain
13 chr1:67441600-67485200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
14 chr1:67443400-67466800 Weak transcription Skeletal Muscle Male skeletal muscle
15 chr1:67445400-67458200 Weak transcription Fetal Heart heart
16 chr1:67445400-67483800 Weak transcription ES-I3 Cell Line embryonic stem cell
17 chr1:67447200-67467400 Weak transcription Stomach Mucosa stomach
18 chr1:67447600-67459600 Strong transcription HSMM muscle
19 chr1:67447600-67460000 Strong transcription Fetal Thymus thymus
20 chr1:67447600-67466200 Weak transcription Rectal Smooth Muscle rectum
21 chr1:67447600-67466600 Weak transcription Psoas Muscle Psoas
22 chr1:67447600-67470200 Strong transcription Rectal Mucosa Donor 29 rectum
23 chr1:67447800-67456800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr1:67447800-67457600 Weak transcription Ovary ovary
25 chr1:67447800-67458400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
26 chr1:67448000-67460200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr1:67448000-67470800 Weak transcription Brain Angular Gyrus brain
28 chr1:67448400-67461600 Weak transcription Primary T helper naive cells fromperipheralblood blood
29 chr1:67448800-67456800 Strong transcription Rectal Mucosa Donor 31 rectum
30 chr1:67448800-67462000 Weak transcription NHEK skin
31 chr1:67448800-67466800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
32 chr1:67448800-67468600 Weak transcription HSMMtube muscle
33 chr1:67448800-67470800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
34 chr1:67448800-67484200 Weak transcription Brain Cingulate Gyrus brain
35 chr1:67449000-67457800 Weak transcription Fetal Brain Male brain
36 chr1:67449200-67467400 Weak transcription Fetal Brain Female brain
37 chr1:67449400-67467000 Weak transcription K562 blood
38 chr1:67449400-67501800 Weak transcription Placenta Amnion Placenta Amnion
39 chr1:67449800-67475600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
40 chr1:67450600-67456600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
41 chr1:67450600-67458400 Weak transcription Pancreatic Islets Pancreatic Islet
42 chr1:67450600-67461400 Weak transcription Primary T helper naive cells from peripheral blood blood
43 chr1:67450600-67461600 Weak transcription Brain Substantia Nigra brain
44 chr1:67450600-67464600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
45 chr1:67450600-67485200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
46 chr1:67450800-67456600 Weak transcription H1 Cell Line embryonic stem cell
47 chr1:67450800-67459800 Weak transcription Fetal Intestine Small intestine
48 chr1:67450800-67461600 Weak transcription Brain Inferior Temporal Lobe brain
49 chr1:67450800-67470600 Weak transcription Brain Anterior Caudate brain
50 chr1:67451000-67457000 Strong transcription Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015