Variant report

Variant	rs3924795
Chromosome Location	chr1:67452482-67452483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:67447480..67451162-chr1:67451703..67454927,5	K562	blood:
2	chr1:67305339..67308328-chr1:67451037..67452745,2	K562	blood:
3	chr1:67447480..67451162-chr1:67451490..67454791,4	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10489633	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1074265	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11208977	0.87[ASN][1000 genomes]
rs11208980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208986	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208987	0.87[ASN][1000 genomes]
rs11208988	0.87[ASN][1000 genomes]
rs11208989	0.87[ASN][1000 genomes]
rs11208990	0.87[ASN][1000 genomes]
rs11208993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12059957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060891	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12061148	0.87[ASN][1000 genomes]
rs12062086	0.81[ASN][1000 genomes]
rs12069383	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12070382	0.95[ASN][1000 genomes]
rs12073258	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12074407	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12078209	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12079643	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12081097	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12082330	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12082503	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12090955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12091194	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17097312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17129589	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17129592	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17129595	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17129627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2985809	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3924796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41356950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4553158	1.00[CHB][hapmap]
rs57476475	0.87[ASN][1000 genomes]
rs58083543	0.87[ASN][1000 genomes]
rs58465390	0.87[ASN][1000 genomes]
rs58717164	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6588226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6588231	0.87[ASN][1000 genomes]
rs6588232	0.87[ASN][1000 genomes]
rs6588234	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6681625	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6689240	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6698599	0.87[ASN][1000 genomes]
rs7517647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7524757	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7537490	0.82[CHB][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7538922	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7547791	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7551021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67396800-67458200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:67396800-67459000	Weak transcription	Esophagus	oesophagus
3	chr1:67397600-67457600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:67400600-67466600	Weak transcription	Aorta	Aorta
5	chr1:67406400-67455600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:67410600-67453200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:67411000-67455000	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr1:67411200-67454800	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr1:67411200-67456200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:67413400-67456400	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr1:67414600-67462000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr1:67417000-67462000	Weak transcription	Right Ventricle	heart
13	chr1:67420600-67467000	Weak transcription	Gastric	stomach
14	chr1:67427200-67455200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr1:67430600-67459000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:67432000-67454000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:67432000-67465600	Weak transcription	Pancreas	Pancrea
18	chr1:67432000-67468600	Weak transcription	Lung	lung
19	chr1:67433200-67456600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:67434000-67455400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:67435800-67453000	Strong transcription	Placenta	Placenta
22	chr1:67436400-67453400	Strong transcription	HMEC	breast
23	chr1:67436600-67457000	Strong transcription	NH-A	brain
24	chr1:67439200-67456400	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr1:67439800-67456400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr1:67440000-67452800	Strong transcription	Primary B cells from peripheral blood	blood
27	chr1:67440000-67453200	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr1:67440600-67455800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr1:67441600-67485200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr1:67442000-67452800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr1:67443200-67455000	Weak transcription	Spleen	Spleen
32	chr1:67443400-67466800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr1:67444000-67455200	Weak transcription	Fetal Stomach	stomach
34	chr1:67445400-67458200	Weak transcription	Fetal Heart	heart
35	chr1:67445400-67483800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr1:67446600-67456400	Strong transcription	HUVEC	blood vessel
37	chr1:67447200-67456200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr1:67447200-67467400	Weak transcription	Stomach Mucosa	stomach
39	chr1:67447400-67455400	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr1:67447600-67454800	Weak transcription	Thymus	Thymus
41	chr1:67447600-67459600	Strong transcription	HSMM	muscle
42	chr1:67447600-67460000	Strong transcription	Fetal Thymus	thymus
43	chr1:67447600-67466200	Weak transcription	Rectal Smooth Muscle	rectum
44	chr1:67447600-67466600	Weak transcription	Psoas Muscle	Psoas
45	chr1:67447600-67470200	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr1:67447800-67454800	Strong transcription	NHDF-Ad	bronchial
47	chr1:67447800-67455600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr1:67447800-67455600	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr1:67447800-67455800	Strong transcription	Primary hematopoietic stem cells	blood
50	chr1:67447800-67455800	Strong transcription	Osteobl	bone

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