Variant report

Variant	rs58083543
Chromosome Location	chr1:67478156-67478157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:67467282..67470701-chr1:67477543..67480153,4	K562	blood:
2	chr1:67472688..67474610-chr1:67477630..67479689,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10489633	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1074265	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11208977	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208980	0.87[ASN][1000 genomes]
rs11208986	0.87[ASN][1000 genomes]
rs11208987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208988	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12059957	0.87[ASN][1000 genomes]
rs12060891	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12061148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12069383	0.87[ASN][1000 genomes]
rs12070382	0.83[ASN][1000 genomes]
rs12073258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12079643	0.87[ASN][1000 genomes]
rs12081097	0.87[ASN][1000 genomes]
rs12082330	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12082503	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12091194	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17129589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2985809	0.91[ASN][1000 genomes]
rs3924795	0.87[ASN][1000 genomes]
rs3924796	0.87[ASN][1000 genomes]
rs41356950	0.87[ASN][1000 genomes]
rs56774527	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57476475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58096117	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58465390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58717164	0.87[ASN][1000 genomes]
rs6588231	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6588232	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6588234	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6689240	0.87[ASN][1000 genomes]
rs6698599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67073063	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67471683	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7517647	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7520341	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7547791	0.87[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs58083543	SLC35D1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67441600-67485200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:67445400-67483800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:67448800-67484200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:67449400-67501800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr1:67450600-67485200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:67451200-67506200	Weak transcription	Hela-S3	cervix
7	chr1:67453200-67484000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr1:67454800-67483200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr1:67454800-67484200	Weak transcription	NHDF-Ad	bronchial
10	chr1:67455000-67484000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr1:67455000-67484200	Weak transcription	GM12878-XiMat	blood
12	chr1:67455200-67495000	Weak transcription	Small Intestine	intestine
13	chr1:67455400-67509400	Weak transcription	Spleen	Spleen
14	chr1:67455600-67484200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr1:67455800-67478200	Strong transcription	Liver	Liver
16	chr1:67455800-67485600	Weak transcription	HMEC	breast
17	chr1:67456400-67484800	Weak transcription	HUVEC	blood vessel
18	chr1:67460000-67485200	Weak transcription	Esophagus	oesophagus
19	chr1:67461200-67478600	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr1:67461600-67479200	Strong transcription	Fetal Intestine Large	intestine
21	chr1:67462000-67478400	Strong transcription	Fetal Thymus	thymus
22	chr1:67462000-67480400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:67462200-67484400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr1:67462400-67484200	Weak transcription	Ovary	ovary
25	chr1:67462400-67508400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr1:67462600-67479400	Weak transcription	NHEK	skin
27	chr1:67464200-67478800	Strong transcription	Primary B cells from cord blood	blood
28	chr1:67465000-67484200	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr1:67465200-67502400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr1:67465200-67506400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr1:67466200-67478600	Strong transcription	Primary T cells from cord blood	blood
32	chr1:67466800-67484200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr1:67468000-67478600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr1:67468000-67484400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr1:67468000-67485600	Weak transcription	Aorta	Aorta
36	chr1:67468200-67479400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr1:67468600-67479200	Weak transcription	K562	blood
38	chr1:67468600-67501800	Weak transcription	Psoas Muscle	Psoas
39	chr1:67469000-67484400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr1:67469200-67483200	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr1:67469200-67484400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr1:67469400-67485000	Weak transcription	HSMMtube	muscle
43	chr1:67469600-67484200	Weak transcription	Stomach Smooth Muscle	stomach
44	chr1:67470000-67483600	Weak transcription	NH-A	brain
45	chr1:67470800-67483800	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr1:67470800-67505400	Weak transcription	Gastric	stomach
47	chr1:67471200-67481200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr1:67471200-67484400	Weak transcription	Osteobl	bone
49	chr1:67471200-67486600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr1:67471400-67483400	Weak transcription	Brain Anterior Caudate	brain

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