Variant report

Variant	rs56776467
Chromosome Location	chr17:63227301-63227302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs55944145	1.00[AMR][1000 genomes]
rs55963637	1.00[AMR][1000 genomes]
rs55990302	1.00[AMR][1000 genomes]
rs56081678	1.00[AMR][1000 genomes]
rs56264686	1.00[AMR][1000 genomes]
rs56818563	1.00[AMR][1000 genomes]
rs58606080	1.00[AMR][1000 genomes]
rs59024552	1.00[AMR][1000 genomes]
rs60051589	1.00[AMR][1000 genomes]
rs61070431	1.00[AMR][1000 genomes]
rs7220188	1.00[AMR][1000 genomes]
rs73994750	1.00[AMR][1000 genomes]
rs73994782	1.00[AMR][1000 genomes]
rs73994788	1.00[AMR][1000 genomes]
rs73994790	1.00[AMR][1000 genomes]
rs73994792	1.00[AMR][1000 genomes]
rs73994793	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63221600-63228000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:63225200-63227600	Weak transcription	Stomach Mucosa	stomach
3	chr17:63225200-63227800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr17:63225200-63228200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr17:63225400-63231600	Weak transcription	Osteobl	bone
6	chr17:63225600-63227400	Weak transcription	HSMM	muscle
7	chr17:63225600-63227400	Weak transcription	NH-A	brain
8	chr17:63225600-63227800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr17:63225600-63227800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr17:63225600-63228000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr17:63225800-63227600	Weak transcription	HUVEC	blood vessel
12	chr17:63225800-63227600	Weak transcription	NHDF-Ad	bronchial
13	chr17:63225800-63227800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr17:63225800-63227800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr17:63226000-63227800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr17:63226000-63228000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr17:63226200-63227800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr17:63226400-63227800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr17:63226800-63227600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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