Variant report

Variant	rs55990302
Chromosome Location	chr17:63257896-63257897
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:63254495..63257131-chr17:63257745..63260137,2	K562	blood:

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs16960828	1.00[EUR][1000 genomes]
rs16960834	1.00[EUR][1000 genomes]
rs16961446	1.00[EUR][1000 genomes]
rs16961700	1.00[EUR][1000 genomes]
rs16962050	1.00[EUR][1000 genomes]
rs2109447	1.00[EUR][1000 genomes]
rs2137976	1.00[EUR][1000 genomes]
rs2869585	1.00[EUR][1000 genomes]
rs2869587	1.00[EUR][1000 genomes]
rs2904133	1.00[EUR][1000 genomes]
rs378764	1.00[EUR][1000 genomes]
rs385608	1.00[EUR][1000 genomes]
rs4129027	1.00[EUR][1000 genomes]
rs55944145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55963637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56081678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56264686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56719687	1.00[EUR][1000 genomes]
rs56776467	1.00[AMR][1000 genomes]
rs56818563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57088441	1.00[EUR][1000 genomes]
rs57311249	1.00[EUR][1000 genomes]
rs57411829	1.00[EUR][1000 genomes]
rs57859065	1.00[EUR][1000 genomes]
rs58606080	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59024552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59203896	1.00[EUR][1000 genomes]
rs59400153	1.00[EUR][1000 genomes]
rs60051589	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60264965	1.00[EUR][1000 genomes]
rs60320143	1.00[EUR][1000 genomes]
rs60568462	1.00[EUR][1000 genomes]
rs61070431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61534937	1.00[EUR][1000 genomes]
rs6504283	1.00[EUR][1000 genomes]
rs6504284	1.00[EUR][1000 genomes]
rs6504286	1.00[EUR][1000 genomes]
rs7217524	1.00[EUR][1000 genomes]
rs7217548	1.00[EUR][1000 genomes]
rs7218518	1.00[EUR][1000 genomes]
rs7220188	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7223308	1.00[EUR][1000 genomes]
rs73349122	1.00[EUR][1000 genomes]
rs73994750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73994752	1.00[EUR][1000 genomes]
rs73994754	1.00[EUR][1000 genomes]
rs73994756	1.00[EUR][1000 genomes]
rs73994757	1.00[EUR][1000 genomes]
rs73994758	1.00[EUR][1000 genomes]
rs73994760	1.00[EUR][1000 genomes]
rs73994761	1.00[EUR][1000 genomes]
rs73994763	1.00[EUR][1000 genomes]
rs73994764	1.00[EUR][1000 genomes]
rs73994765	1.00[EUR][1000 genomes]
rs73994766	1.00[EUR][1000 genomes]
rs73994767	1.00[EUR][1000 genomes]
rs73994770	1.00[EUR][1000 genomes]
rs73994771	1.00[EUR][1000 genomes]
rs73994772	1.00[EUR][1000 genomes]
rs73994774	1.00[EUR][1000 genomes]
rs73994782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73994788	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73994790	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73994792	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73994793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7503762	1.00[EUR][1000 genomes]
rs8065438	1.00[EUR][1000 genomes]
rs8065444	1.00[EUR][1000 genomes]
rs8066063	1.00[EUR][1000 genomes]
rs8066072	1.00[EUR][1000 genomes]
rs8066092	1.00[EUR][1000 genomes]
rs8066191	1.00[EUR][1000 genomes]
rs8068016	1.00[EUR][1000 genomes]
rs8071641	1.00[EUR][1000 genomes]
rs8073544	1.00[EUR][1000 genomes]
rs8073716	1.00[EUR][1000 genomes]
rs8074507	1.00[EUR][1000 genomes]
rs8077510	1.00[EUR][1000 genomes]
rs8077956	1.00[EUR][1000 genomes]
rs8078032	1.00[EUR][1000 genomes]
rs8078045	1.00[EUR][1000 genomes]
rs8078298	1.00[EUR][1000 genomes]
rs8078885	1.00[EUR][1000 genomes]
rs954496	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63253600-63260200	Weak transcription	Pancreas	Pancrea
2	chr17:63257400-63258200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr17:63257600-63258200	Enhancers	HUVEC	blood vessel
4	chr17:63257800-63259000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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