Variant report

Variant	rs8074507
Chromosome Location	chr17:63156847-63156848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:63120023..63122659-chr17:63155151..63157208,2	MCF-7	breast:
2	chr17:63144698..63147268-chr17:63155004..63157714,2	K562	blood:
3	chr17:63084866..63085579-chr17:63156438..63156968,2	MCF-7	breast:
4	chr17:63154994..63157308-chr17:63182219..63184925,2	MCF-7	breast:
5	chr17:63152855..63155592-chr17:63155729..63157725,2	MCF-7	breast:
6	chr17:63156678..63157226-chr17:63190609..63191440,3	MCF-7	breast:
7	chr17:63156335..63157305-chr17:63190509..63191511,8	MCF-7	breast:
8	chr17:63156468..63157215-chr17:63166885..63167491,2	MCF-7	breast:
9	chr17:63156335..63157199-chr17:63190509..63191412,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000108370	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs16960828	1.00[EUR][1000 genomes]
rs16960834	1.00[EUR][1000 genomes]
rs16961446	1.00[EUR][1000 genomes]
rs16961700	1.00[EUR][1000 genomes]
rs16962050	1.00[EUR][1000 genomes]
rs2109447	1.00[EUR][1000 genomes]
rs2137976	1.00[EUR][1000 genomes]
rs2869585	1.00[EUR][1000 genomes]
rs2869587	1.00[EUR][1000 genomes]
rs2904133	1.00[EUR][1000 genomes]
rs378764	1.00[EUR][1000 genomes]
rs385608	1.00[EUR][1000 genomes]
rs4129027	1.00[EUR][1000 genomes]
rs55944145	1.00[EUR][1000 genomes]
rs55963637	1.00[EUR][1000 genomes]
rs55990302	1.00[EUR][1000 genomes]
rs56081678	1.00[EUR][1000 genomes]
rs56264686	1.00[EUR][1000 genomes]
rs56719687	1.00[EUR][1000 genomes]
rs56818563	1.00[EUR][1000 genomes]
rs57088441	1.00[EUR][1000 genomes]
rs57311249	1.00[EUR][1000 genomes]
rs57411829	1.00[EUR][1000 genomes]
rs57859065	1.00[EUR][1000 genomes]
rs58606080	1.00[EUR][1000 genomes]
rs59024552	1.00[EUR][1000 genomes]
rs59203896	1.00[EUR][1000 genomes]
rs59400153	1.00[EUR][1000 genomes]
rs60051589	1.00[EUR][1000 genomes]
rs60264965	1.00[EUR][1000 genomes]
rs60320143	1.00[EUR][1000 genomes]
rs60568462	1.00[EUR][1000 genomes]
rs61070431	1.00[EUR][1000 genomes]
rs61534937	1.00[EUR][1000 genomes]
rs6504283	1.00[EUR][1000 genomes]
rs6504284	1.00[EUR][1000 genomes]
rs6504286	1.00[EUR][1000 genomes]
rs7217524	1.00[EUR][1000 genomes]
rs7217548	1.00[EUR][1000 genomes]
rs7218518	1.00[EUR][1000 genomes]
rs7220188	1.00[EUR][1000 genomes]
rs7223308	1.00[EUR][1000 genomes]
rs73349122	1.00[EUR][1000 genomes]
rs73994750	1.00[EUR][1000 genomes]
rs73994752	1.00[EUR][1000 genomes]
rs73994754	1.00[EUR][1000 genomes]
rs73994756	1.00[EUR][1000 genomes]
rs73994757	1.00[EUR][1000 genomes]
rs73994758	1.00[EUR][1000 genomes]
rs73994760	1.00[EUR][1000 genomes]
rs73994761	1.00[EUR][1000 genomes]
rs73994763	1.00[EUR][1000 genomes]
rs73994764	1.00[EUR][1000 genomes]
rs73994765	1.00[EUR][1000 genomes]
rs73994766	1.00[EUR][1000 genomes]
rs73994767	1.00[EUR][1000 genomes]
rs73994770	1.00[EUR][1000 genomes]
rs73994771	1.00[EUR][1000 genomes]
rs73994772	1.00[EUR][1000 genomes]
rs73994774	1.00[EUR][1000 genomes]
rs73994782	1.00[EUR][1000 genomes]
rs73994788	1.00[EUR][1000 genomes]
rs73994790	1.00[EUR][1000 genomes]
rs73994792	1.00[EUR][1000 genomes]
rs73994793	1.00[EUR][1000 genomes]
rs8065438	1.00[EUR][1000 genomes]
rs8065444	1.00[EUR][1000 genomes]
rs8066063	1.00[EUR][1000 genomes]
rs8066072	1.00[EUR][1000 genomes]
rs8066092	1.00[EUR][1000 genomes]
rs8066191	1.00[EUR][1000 genomes]
rs8068016	1.00[EUR][1000 genomes]
rs8071641	1.00[EUR][1000 genomes]
rs8073544	1.00[EUR][1000 genomes]
rs8073716	1.00[EUR][1000 genomes]
rs8077510	1.00[EUR][1000 genomes]
rs8077956	1.00[EUR][1000 genomes]
rs8078032	1.00[EUR][1000 genomes]
rs8078045	1.00[EUR][1000 genomes]
rs8078298	1.00[EUR][1000 genomes]
rs8078885	1.00[EUR][1000 genomes]
rs954496	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3445623	chr17:63156436-63156975	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63134400-63169000	Weak transcription	Colon Smooth Muscle	Colon
2	chr17:63141000-63175200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr17:63143600-63169400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr17:63145800-63167000	Weak transcription	Aorta	Aorta
5	chr17:63148400-63160000	Weak transcription	Lung	lung
6	chr17:63150200-63162800	Weak transcription	Fetal Stomach	stomach
7	chr17:63151400-63160000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr17:63151800-63160200	Weak transcription	Spleen	Spleen
9	chr17:63152000-63159800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr17:63152400-63159800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr17:63153600-63159800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr17:63153600-63175400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr17:63155200-63159600	Weak transcription	K562	blood
14	chr17:63155200-63160000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr17:63156000-63164400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr17:63156200-63160000	Weak transcription	Thymus	Thymus
17	chr17:63156400-63157200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr17:63156600-63157000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr17:63156600-63157000	Strong transcription	Brain Anterior Caudate	brain
20	chr17:63156600-63157200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr17:63156600-63157400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr17:63156600-63159600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr17:63156600-63165600	Weak transcription	Dnd41	blood
24	chr17:63156800-63157200	Enhancers	H1 Cell Line	embryonic stem cell
25	chr17:63156800-63157400	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr17:63156800-63159800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr17:63156800-63159800	Weak transcription	Fetal Thymus	thymus

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