Variant report

Variant	rs378764
Chromosome Location	chr17:63105969-63105970
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:63104937..63106962-chr17:63110869..63114736,3	MCF-7	breast:
2	chr17:63103004..63106074-chr17:63118329..63120568,5	MCF-7	breast:
3	chr17:63103464..63106630-chr17:63116614..63119834,3	K562	blood:
4	chr17:62967915..62971440-chr17:63104583..63107908,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214174	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs16960828	1.00[EUR][1000 genomes]
rs16960834	1.00[EUR][1000 genomes]
rs16961446	1.00[EUR][1000 genomes]
rs16961700	1.00[EUR][1000 genomes]
rs183335	0.83[AFR][1000 genomes]
rs2109447	1.00[EUR][1000 genomes]
rs2137976	1.00[EUR][1000 genomes]
rs2869585	1.00[EUR][1000 genomes]
rs2869587	1.00[EUR][1000 genomes]
rs2904133	1.00[EUR][1000 genomes]
rs385608	0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs390970	0.90[AFR][1000 genomes]
rs4129027	1.00[EUR][1000 genomes]
rs413223	0.89[AFR][1000 genomes]
rs55944145	1.00[EUR][1000 genomes]
rs55963637	1.00[EUR][1000 genomes]
rs55990302	1.00[EUR][1000 genomes]
rs56081678	1.00[EUR][1000 genomes]
rs56264686	1.00[EUR][1000 genomes]
rs56719687	1.00[EUR][1000 genomes]
rs56818563	1.00[EUR][1000 genomes]
rs57088441	1.00[EUR][1000 genomes]
rs57311249	1.00[EUR][1000 genomes]
rs57411829	1.00[EUR][1000 genomes]
rs58606080	1.00[EUR][1000 genomes]
rs59024552	1.00[EUR][1000 genomes]
rs59203896	1.00[EUR][1000 genomes]
rs59400153	1.00[EUR][1000 genomes]
rs60051589	1.00[EUR][1000 genomes]
rs60264965	1.00[EUR][1000 genomes]
rs60320143	1.00[EUR][1000 genomes]
rs60568462	1.00[EUR][1000 genomes]
rs61070431	1.00[EUR][1000 genomes]
rs61534937	1.00[EUR][1000 genomes]
rs6504283	1.00[EUR][1000 genomes]
rs6504284	1.00[EUR][1000 genomes]
rs6504286	1.00[EUR][1000 genomes]
rs7217524	1.00[EUR][1000 genomes]
rs7217548	1.00[EUR][1000 genomes]
rs7218518	1.00[EUR][1000 genomes]
rs7220188	1.00[EUR][1000 genomes]
rs7223308	1.00[EUR][1000 genomes]
rs73349122	1.00[EUR][1000 genomes]
rs73994750	1.00[EUR][1000 genomes]
rs73994752	1.00[EUR][1000 genomes]
rs73994754	1.00[EUR][1000 genomes]
rs73994756	1.00[EUR][1000 genomes]
rs73994757	1.00[EUR][1000 genomes]
rs73994758	1.00[EUR][1000 genomes]
rs73994760	1.00[EUR][1000 genomes]
rs73994761	1.00[EUR][1000 genomes]
rs73994763	1.00[EUR][1000 genomes]
rs73994764	1.00[EUR][1000 genomes]
rs73994765	1.00[EUR][1000 genomes]
rs73994766	1.00[EUR][1000 genomes]
rs73994767	1.00[EUR][1000 genomes]
rs73994770	1.00[EUR][1000 genomes]
rs73994771	1.00[EUR][1000 genomes]
rs73994772	1.00[EUR][1000 genomes]
rs73994774	1.00[EUR][1000 genomes]
rs73994782	1.00[EUR][1000 genomes]
rs73994788	1.00[EUR][1000 genomes]
rs8065438	1.00[EUR][1000 genomes]
rs8065444	1.00[EUR][1000 genomes]
rs8066063	1.00[EUR][1000 genomes]
rs8066072	1.00[EUR][1000 genomes]
rs8066092	1.00[EUR][1000 genomes]
rs8066191	1.00[EUR][1000 genomes]
rs8068016	1.00[EUR][1000 genomes]
rs8071641	1.00[EUR][1000 genomes]
rs8073544	1.00[EUR][1000 genomes]
rs8073716	1.00[EUR][1000 genomes]
rs8074507	1.00[EUR][1000 genomes]
rs8077510	1.00[EUR][1000 genomes]
rs8077956	1.00[EUR][1000 genomes]
rs8078032	1.00[EUR][1000 genomes]
rs8078045	1.00[EUR][1000 genomes]
rs8078298	1.00[EUR][1000 genomes]
rs8078885	1.00[EUR][1000 genomes]
rs954496	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066765	chr17:62649313-63124303	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv575872	chr17:63084995-63111452	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63097400-63112000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr17:63097600-63111800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr17:63097800-63107000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr17:63097800-63107400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr17:63097800-63112200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr17:63103000-63118800	Weak transcription	Aorta	Aorta
7	chr17:63103200-63107800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr17:63103200-63108200	Weak transcription	A549	lung
9	chr17:63103200-63108600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr17:63103200-63112400	Weak transcription	Ovary	ovary
11	chr17:63103200-63118400	Weak transcription	Left Ventricle	heart
12	chr17:63103200-63118800	Weak transcription	Right Atrium	heart
13	chr17:63103400-63107200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr17:63103400-63107400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr17:63103400-63109800	Weak transcription	Fetal Stomach	stomach
16	chr17:63103400-63118600	Weak transcription	Brain Anterior Caudate	brain
17	chr17:63103400-63118600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr17:63103800-63118600	Weak transcription	Psoas Muscle	Psoas
19	chr17:63104000-63108800	Weak transcription	Fetal Muscle Leg	muscle
20	chr17:63104000-63118600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr17:63104000-63118800	Weak transcription	Colon Smooth Muscle	Colon
22	chr17:63104200-63107800	Weak transcription	Brain Germinal Matrix	brain
23	chr17:63104200-63118600	Weak transcription	Brain Hippocampus Middle	brain
24	chr17:63104400-63118600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr17:63105200-63106200	Strong transcription	Fetal Lung	lung
26	chr17:63105600-63107200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr17:63105800-63106000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr17:63105800-63106400	Enhancers	Adipose Nuclei	Adipose
29	chr17:63105800-63106600	Enhancers	NHDF-Ad	bronchial
30	chr17:63105800-63107000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr17:63105800-63107000	Enhancers	Esophagus	oesophagus
32	chr17:63105800-63107000	Enhancers	Osteobl	bone

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