Variant report

Variant	rs16960834
Chromosome Location	chr17:63169834-63169835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:63051300..63053869-chr17:63168006..63170478,2	K562	blood:
2	chr17:63117456..63119485-chr17:63168977..63171094,3	K562	blood:
3	chr17:62971936..62973438-chr17:63168218..63170774,2	K562	blood:
4	chr17:63168106..63170143-chr17:63186322..63188015,2	MCF-7	breast:
5	chr17:63167995..63174174-chr17:63174484..63177820,5	MCF-7	breast:
6	chr17:63169209..63171609-chr17:63173762..63176573,2	MCF-7	breast:
7	chr17:63106384..63108282-chr17:63168759..63171102,2	K562	blood:
8	chr17:63166945..63171394-chr17:63172281..63178092,5	K562	blood:
9	chr17:63160128..63162121-chr17:63168023..63170188,2	K562	blood:
10	chr17:63158962..63160565-chr17:63168020..63170468,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000120063	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs16960828	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16961446	1.00[EUR][1000 genomes]
rs16961700	1.00[EUR][1000 genomes]
rs16962050	1.00[EUR][1000 genomes]
rs2109447	1.00[EUR][1000 genomes]
rs2137976	1.00[EUR][1000 genomes]
rs2869585	1.00[EUR][1000 genomes]
rs2869587	1.00[EUR][1000 genomes]
rs2904133	1.00[EUR][1000 genomes]
rs378764	1.00[EUR][1000 genomes]
rs385608	1.00[EUR][1000 genomes]
rs4129027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55944145	1.00[EUR][1000 genomes]
rs55963637	1.00[EUR][1000 genomes]
rs55990302	1.00[EUR][1000 genomes]
rs56081678	1.00[EUR][1000 genomes]
rs56264686	1.00[EUR][1000 genomes]
rs56719687	1.00[EUR][1000 genomes]
rs56818563	1.00[EUR][1000 genomes]
rs57088441	1.00[EUR][1000 genomes]
rs57311249	1.00[EUR][1000 genomes]
rs57411829	1.00[EUR][1000 genomes]
rs57859065	1.00[EUR][1000 genomes]
rs58606080	1.00[EUR][1000 genomes]
rs59024552	1.00[EUR][1000 genomes]
rs59203896	1.00[EUR][1000 genomes]
rs59400153	1.00[EUR][1000 genomes]
rs60051589	1.00[EUR][1000 genomes]
rs60264965	1.00[EUR][1000 genomes]
rs60320143	1.00[EUR][1000 genomes]
rs60568462	1.00[EUR][1000 genomes]
rs61070431	1.00[EUR][1000 genomes]
rs61534937	1.00[EUR][1000 genomes]
rs6504283	1.00[EUR][1000 genomes]
rs6504284	1.00[EUR][1000 genomes]
rs6504286	1.00[EUR][1000 genomes]
rs7217524	1.00[EUR][1000 genomes]
rs7217548	1.00[EUR][1000 genomes]
rs7218518	1.00[EUR][1000 genomes]
rs7220188	1.00[EUR][1000 genomes]
rs7223308	1.00[EUR][1000 genomes]
rs73349122	1.00[EUR][1000 genomes]
rs73994750	1.00[EUR][1000 genomes]
rs73994752	1.00[EUR][1000 genomes]
rs73994754	1.00[EUR][1000 genomes]
rs73994756	1.00[EUR][1000 genomes]
rs73994757	1.00[EUR][1000 genomes]
rs73994758	1.00[EUR][1000 genomes]
rs73994760	1.00[EUR][1000 genomes]
rs73994761	1.00[EUR][1000 genomes]
rs73994763	1.00[EUR][1000 genomes]
rs73994764	1.00[EUR][1000 genomes]
rs73994765	1.00[EUR][1000 genomes]
rs73994766	1.00[EUR][1000 genomes]
rs73994767	1.00[EUR][1000 genomes]
rs73994770	1.00[EUR][1000 genomes]
rs73994771	1.00[EUR][1000 genomes]
rs73994772	1.00[EUR][1000 genomes]
rs73994774	1.00[EUR][1000 genomes]
rs73994782	1.00[EUR][1000 genomes]
rs73994788	1.00[EUR][1000 genomes]
rs73994790	1.00[EUR][1000 genomes]
rs73994792	1.00[EUR][1000 genomes]
rs73994793	1.00[EUR][1000 genomes]
rs7503762	1.00[EUR][1000 genomes]
rs8065438	1.00[EUR][1000 genomes]
rs8065444	1.00[EUR][1000 genomes]
rs8066063	1.00[EUR][1000 genomes]
rs8066072	1.00[EUR][1000 genomes]
rs8066092	1.00[EUR][1000 genomes]
rs8066191	1.00[EUR][1000 genomes]
rs8068016	1.00[EUR][1000 genomes]
rs8071641	1.00[EUR][1000 genomes]
rs8073544	1.00[EUR][1000 genomes]
rs8073716	1.00[EUR][1000 genomes]
rs8074507	1.00[EUR][1000 genomes]
rs8077510	1.00[EUR][1000 genomes]
rs8077956	1.00[EUR][1000 genomes]
rs8078032	1.00[EUR][1000 genomes]
rs8078045	1.00[EUR][1000 genomes]
rs8078298	1.00[EUR][1000 genomes]
rs8078885	1.00[EUR][1000 genomes]
rs954496	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3341476	chr17:63168490-63172688	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63141000-63175200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr17:63153600-63175400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr17:63157000-63179800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr17:63160000-63180400	Weak transcription	Brain Substantia Nigra	brain
5	chr17:63166600-63170000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr17:63166600-63170000	Enhancers	HUVEC	blood vessel
7	chr17:63166600-63170600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr17:63166600-63170600	Enhancers	Fetal Thymus	thymus
9	chr17:63167000-63172600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr17:63167200-63170800	Enhancers	Primary hematopoietic stem cells	blood
11	chr17:63167400-63175200	Weak transcription	Brain Germinal Matrix	brain
12	chr17:63167600-63170800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr17:63167600-63171400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr17:63167600-63172800	Enhancers	Primary T cells fromperipheralblood	blood
15	chr17:63167600-63175000	Weak transcription	Brain Angular Gyrus	brain
16	chr17:63167800-63170200	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr17:63167800-63171400	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr17:63167800-63172800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr17:63167800-63175000	Weak transcription	Fetal Brain Female	brain
20	chr17:63168000-63170600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr17:63168000-63171200	Weak transcription	Fetal Brain Male	brain
22	chr17:63168200-63170000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr17:63168200-63170600	Weak transcription	Pancreas	Pancrea
24	chr17:63168600-63170200	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr17:63168800-63170200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr17:63168800-63170200	Enhancers	Stomach Smooth Muscle	stomach
27	chr17:63168800-63170200	Enhancers	A549	lung
28	chr17:63169000-63171200	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr17:63169000-63172000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr17:63169200-63170000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr17:63169200-63170000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr17:63169200-63170200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr17:63169200-63170200	Flanking Active TSS	K562	blood
34	chr17:63169200-63170800	Enhancers	Thymus	Thymus
35	chr17:63169400-63170000	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr17:63169400-63170000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr17:63169400-63170000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr17:63169400-63170000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr17:63169400-63170000	Enhancers	Muscle Satellite Cultured Cells	--
40	chr17:63169400-63170000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr17:63169400-63170000	Enhancers	NH-A	brain
42	chr17:63169400-63170200	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr17:63169400-63170200	Bivalent Enhancer	Placenta	Placenta
44	chr17:63169400-63170200	Enhancers	Right Atrium	heart
45	chr17:63169400-63170400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr17:63169400-63170400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
47	chr17:63169400-63170600	Enhancers	Primary B cells from peripheral blood	blood
48	chr17:63169400-63170600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
49	chr17:63169400-63170600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr17:63169400-63170600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links