Variant report

Variant	rs73994790
Chromosome Location	chr17:63274097-63274098
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:63274077..63275163-chr17:63983745..63984867,8	MCF-7	breast:
2	chr1:121485416..121485929-chr17:63273386..63274240,2	MCF-7	breast:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs16960828	1.00[EUR][1000 genomes]
rs16960834	1.00[EUR][1000 genomes]
rs16961446	1.00[EUR][1000 genomes]
rs16961700	1.00[EUR][1000 genomes]
rs16962050	1.00[EUR][1000 genomes]
rs2109447	1.00[EUR][1000 genomes]
rs2137976	1.00[EUR][1000 genomes]
rs2869585	1.00[EUR][1000 genomes]
rs2869587	1.00[EUR][1000 genomes]
rs2904133	1.00[EUR][1000 genomes]
rs4129027	1.00[EUR][1000 genomes]
rs55944145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55963637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55990302	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56081678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56264686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56719687	1.00[EUR][1000 genomes]
rs56776467	1.00[AMR][1000 genomes]
rs56818563	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57088441	1.00[EUR][1000 genomes]
rs57311249	1.00[EUR][1000 genomes]
rs57411829	1.00[EUR][1000 genomes]
rs57859065	1.00[EUR][1000 genomes]
rs58606080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59024552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59203896	1.00[EUR][1000 genomes]
rs59400153	1.00[EUR][1000 genomes]
rs60051589	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60264965	1.00[EUR][1000 genomes]
rs60320143	1.00[EUR][1000 genomes]
rs60568462	1.00[EUR][1000 genomes]
rs61070431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61534937	1.00[EUR][1000 genomes]
rs6504283	1.00[EUR][1000 genomes]
rs6504284	1.00[EUR][1000 genomes]
rs6504286	1.00[EUR][1000 genomes]
rs7217524	1.00[EUR][1000 genomes]
rs7217548	1.00[EUR][1000 genomes]
rs7218518	1.00[EUR][1000 genomes]
rs7220188	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7223308	1.00[EUR][1000 genomes]
rs73349122	1.00[EUR][1000 genomes]
rs73994750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73994752	1.00[EUR][1000 genomes]
rs73994754	1.00[EUR][1000 genomes]
rs73994756	1.00[EUR][1000 genomes]
rs73994757	1.00[EUR][1000 genomes]
rs73994758	1.00[EUR][1000 genomes]
rs73994760	1.00[EUR][1000 genomes]
rs73994761	1.00[EUR][1000 genomes]
rs73994763	1.00[EUR][1000 genomes]
rs73994764	1.00[EUR][1000 genomes]
rs73994765	1.00[EUR][1000 genomes]
rs73994766	1.00[EUR][1000 genomes]
rs73994767	1.00[EUR][1000 genomes]
rs73994770	1.00[EUR][1000 genomes]
rs73994771	1.00[EUR][1000 genomes]
rs73994772	1.00[EUR][1000 genomes]
rs73994774	1.00[EUR][1000 genomes]
rs73994782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73994788	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73994792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73994793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7503762	1.00[EUR][1000 genomes]
rs8065438	1.00[EUR][1000 genomes]
rs8065444	1.00[EUR][1000 genomes]
rs8066063	1.00[EUR][1000 genomes]
rs8066072	1.00[EUR][1000 genomes]
rs8066092	1.00[EUR][1000 genomes]
rs8066191	1.00[EUR][1000 genomes]
rs8068016	1.00[EUR][1000 genomes]
rs8071641	1.00[EUR][1000 genomes]
rs8073544	1.00[EUR][1000 genomes]
rs8073716	1.00[EUR][1000 genomes]
rs8074507	1.00[EUR][1000 genomes]
rs8077510	1.00[EUR][1000 genomes]
rs8077956	1.00[EUR][1000 genomes]
rs8078032	1.00[EUR][1000 genomes]
rs8078045	1.00[EUR][1000 genomes]
rs8078298	1.00[EUR][1000 genomes]
rs8078885	1.00[EUR][1000 genomes]
rs954496	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63267400-63274600	Weak transcription	Fetal Brain Female	brain
2	chr17:63273000-63274400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr17:63273000-63274400	Enhancers	Colon Smooth Muscle	Colon
4	chr17:63273000-63274800	Enhancers	Placenta Amnion	Placenta Amnion
5	chr17:63273000-63275200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr17:63273000-63276000	Enhancers	Fetal Brain Male	brain
7	chr17:63273200-63274200	Enhancers	Aorta	Aorta
8	chr17:63273200-63274400	Enhancers	Fetal Stomach	stomach
9	chr17:63273200-63274800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr17:63273200-63275000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr17:63273400-63274200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr17:63273400-63274400	Enhancers	GM12878-XiMat	blood
13	chr17:63273400-63274600	Enhancers	NHLF	lung
14	chr17:63273400-63275000	Enhancers	Fetal Heart	heart
15	chr17:63273400-63275000	Enhancers	Fetal Thymus	thymus
16	chr17:63273400-63275200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr17:63273400-63275200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr17:63273600-63274200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr17:63273600-63274200	Bivalent Enhancer	Primary T cells from cord blood	blood
20	chr17:63273600-63274400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr17:63273600-63274400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
22	chr17:63273600-63274400	Flanking Active TSS	HSMMtube	muscle
23	chr17:63273600-63274600	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr17:63273600-63274600	Enhancers	NH-A	brain
25	chr17:63273600-63274800	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr17:63273600-63274800	Enhancers	Placenta	Placenta
27	chr17:63273600-63275000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr17:63273600-63275000	Enhancers	Fetal Lung	lung
29	chr17:63273600-63275200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr17:63273600-63275200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr17:63273800-63274200	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr17:63273800-63274200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr17:63273800-63274400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
34	chr17:63273800-63274400	Active TSS	NHDF-Ad	bronchial
35	chr17:63273800-63274800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr17:63273800-63274800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr17:63273800-63275000	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr17:63274000-63274200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr17:63274000-63274400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr17:63274000-63274400	Active TSS	Stomach Smooth Muscle	stomach
41	chr17:63274000-63274600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr17:63274000-63274800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr17:63274000-63274800	Enhancers	HSMM	muscle
44	chr17:63274000-63279400	Weak transcription	Right Atrium	heart
45	chr17:63274000-63279800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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