Variant report

Variant rs56785477
Chromosome Location chr17:15867033-15867034
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:15851200-15869600 Weak transcription Gastric stomach
2 chr17:15855800-15869800 Weak transcription Fetal Intestine Small intestine
3 chr17:15858000-15868200 Weak transcription Fetal Muscle Trunk muscle
4 chr17:15860000-15868400 Weak transcription iPS-15b Cell Line embryonic stem cell
5 chr17:15860800-15868400 Weak transcription H9 Cell Line embryonic stem cell
6 chr17:15861000-15868600 Weak transcription Esophagus oesophagus
7 chr17:15861200-15868400 Weak transcription Thymus Thymus
8 chr17:15862000-15868600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
9 chr17:15862400-15868600 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr17:15862400-15869800 Weak transcription Spleen Spleen
11 chr17:15862600-15868400 Weak transcription HUES6 Cell Line embryonic stem cell
12 chr17:15862600-15869800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
13 chr17:15862800-15868600 Weak transcription ES-WA7 Cell Line embryonic stem cell
14 chr17:15863000-15868600 Weak transcription Rectal Mucosa Donor 29 rectum
15 chr17:15863000-15869200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
16 chr17:15863400-15867200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
17 chr17:15863400-15868600 Weak transcription Primary hematopoietic stem cells blood
18 chr17:15863400-15869400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
19 chr17:15863400-15869800 Weak transcription Placenta Amnion Placenta Amnion
20 chr17:15863600-15868400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
21 chr17:15864000-15868800 Weak transcription Primary monocytes fromperipheralblood blood
22 chr17:15865200-15868400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
23 chr17:15866200-15867200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr17:15866200-15869800 Enhancers HMEC breast
25 chr17:15866400-15867600 Enhancers Breast Myoepithelial Primary Cells Breast
26 chr17:15866400-15867800 Enhancers A549 lung
27 chr17:15866400-15871800 Enhancers NH-A brain
28 chr17:15866600-15867400 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
29 chr17:15866600-15867400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
30 chr17:15866600-15867400 Enhancers HepG2 liver
31 chr17:15866600-15867600 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr17:15866600-15867600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
33 chr17:15866600-15867600 Enhancers Muscle Satellite Cultured Cells --
34 chr17:15866600-15867800 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
35 chr17:15866600-15867800 Enhancers Placenta Placenta
36 chr17:15866600-15867800 Enhancers Osteobl bone
37 chr17:15866600-15868000 Enhancers Hela-S3 cervix
38 chr17:15866600-15868000 Enhancers HUVEC blood vessel
39 chr17:15866600-15869000 Enhancers Cortex derived primary cultured neurospheres brain
40 chr17:15866600-15871200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr17:15866800-15867200 Enhancers iPS-20b Cell Line embryonic stem cell
42 chr17:15866800-15867200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
43 chr17:15866800-15867200 Transcr. at gene 5' and 3' NHEK skin
44 chr17:15866800-15867400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
45 chr17:15866800-15867400 Enhancers K562 blood
46 chr17:15867000-15867200 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
47 chr17:15867000-15867200 Enhancers Rectal Mucosa Donor 31 rectum
48 chr17:15867000-15867400 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr17:15867000-15867400 Enhancers HSMM muscle
50 chr17:15867000-15867400 Enhancers Monocytes-CD14+_RO01746 blood

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