Variant report

Variant	rs56796126
Chromosome Location	chr1:158243556-158243557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11575805	1.00[AMR][1000 genomes]
rs11575806	1.00[AMR][1000 genomes]
rs16840067	0.80[AFR][1000 genomes]
rs3138100	0.80[AFR][1000 genomes]
rs3138102	0.80[AFR][1000 genomes]
rs41362848	0.80[AFR][1000 genomes]
rs41403751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57327662	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57616755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57958171	1.00[AMR][1000 genomes]
rs58054630	0.80[AFR][1000 genomes]
rs58105033	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59278565	0.80[AFR][1000 genomes]
rs59802009	0.80[AFR][1000 genomes]
rs60092878	1.00[AMR][1000 genomes]
rs60327289	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60637064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60785165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61294256	1.00[AMR][1000 genomes]
rs61542004	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61543191	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6656732	0.80[AFR][1000 genomes]
rs6661689	0.80[AFR][1000 genomes]
rs73021911	1.00[AMR][1000 genomes]
rs73021914	1.00[AMR][1000 genomes]
rs73021915	1.00[AMR][1000 genomes]
rs73021917	1.00[AMR][1000 genomes]
rs73021922	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021923	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021951	0.82[AFR][1000 genomes]
rs73021960	0.80[AFR][1000 genomes]
rs73021962	0.80[AFR][1000 genomes]
rs73023926	0.80[AFR][1000 genomes]
rs73023931	0.80[AFR][1000 genomes]
rs73023932	0.80[AFR][1000 genomes]
rs73023933	0.80[AFR][1000 genomes]
rs73023935	0.80[AFR][1000 genomes]
rs73023938	0.80[AFR][1000 genomes]
rs73023940	0.80[AFR][1000 genomes]
rs7512936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7536443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9659383	0.80[AFR][1000 genomes]
rs9662642	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv831692	chr1:158223459-158392016	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158228800-158243600	Weak transcription	Primary B cells from cord blood	blood
2	chr1:158242800-158243600	Enhancers	Primary B cells from peripheral blood	blood
3	chr1:158242800-158243800	Enhancers	Fetal Thymus	thymus
4	chr1:158243000-158244800	Weak transcription	Thymus	Thymus
5	chr1:158243000-158246000	Enhancers	Dnd41	blood
6	chr1:158243200-158243800	Weak transcription	Primary T cells from cord blood	blood

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