Variant report

Variant	rs3138100
Chromosome Location	chr1:158261071-158261072
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs16840067	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17273762	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3138102	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3138106	1.00[ASW][hapmap];1.00[GIH][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41362848	0.84[ASW][hapmap];0.92[LWK][hapmap];0.82[MKK][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41403751	1.00[ASW][hapmap];1.00[GIH][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes]
rs56796126	0.80[AFR][1000 genomes]
rs57616755	0.80[AFR][1000 genomes]
rs58054630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59278565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59593488	1.00[AMR][1000 genomes]
rs59802009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60637064	0.80[AFR][1000 genomes]
rs60785165	0.80[AFR][1000 genomes]
rs6656732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6661689	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021942	0.80[AFR][1000 genomes]
rs73021943	0.80[AFR][1000 genomes]
rs73021951	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023949	1.00[AMR][1000 genomes]
rs73023975	1.00[AMR][1000 genomes]
rs7512936	0.80[AFR][1000 genomes]
rs7536443	0.80[AFR][1000 genomes]
rs9658822	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9659383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9662642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv831692	chr1:158223459-158392016	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158253800-158262600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:158257200-158264000	Enhancers	Dnd41	blood
3	chr1:158259000-158261400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr1:158259200-158262600	Enhancers	Primary T cells from cord blood	blood
5	chr1:158259400-158261600	Flanking Active TSS	Primary B cells from cord blood	blood
6	chr1:158259400-158261800	Flanking Active TSS	Primary B cells from peripheral blood	blood
7	chr1:158259400-158261800	Flanking Active TSS	Fetal Thymus	thymus
8	chr1:158259400-158262000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr1:158259600-158261400	Enhancers	Primary hematopoietic stem cells	blood
10	chr1:158259600-158261400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
11	chr1:158260800-158261400	Enhancers	GM12878-XiMat	blood
12	chr1:158261000-158262000	Active TSS	Thymus	Thymus

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