Variant report

Variant	rs73021951
Chromosome Location	chr1:158245312-158245313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs16840067	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17273762	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3138100	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3138102	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3138106	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41362848	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41403751	0.82[AFR][1000 genomes]
rs56796126	0.82[AFR][1000 genomes]
rs57616755	0.82[AFR][1000 genomes]
rs58054630	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58105033	0.80[AFR][1000 genomes]
rs59278565	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59593488	1.00[AMR][1000 genomes]
rs59802009	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60637064	0.82[AFR][1000 genomes]
rs60785165	0.82[AFR][1000 genomes]
rs6656732	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6661689	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021942	0.82[AFR][1000 genomes]
rs73021943	0.82[AFR][1000 genomes]
rs73021960	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021962	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023926	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023931	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023932	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023933	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023935	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023938	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023940	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023949	1.00[AMR][1000 genomes]
rs73023975	1.00[AMR][1000 genomes]
rs7512936	0.82[AFR][1000 genomes]
rs7536443	0.82[AFR][1000 genomes]
rs9658822	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9659383	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9662642	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv831692	chr1:158223459-158392016	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158243000-158246000	Enhancers	Dnd41	blood
2	chr1:158243600-158246000	Enhancers	Primary B cells from cord blood	blood
3	chr1:158243800-158245400	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr1:158244200-158245600	Enhancers	Fetal Thymus	thymus
5	chr1:158244600-158245600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:158244600-158246800	Enhancers	Primary B cells from peripheral blood	blood
7	chr1:158244800-158245800	Enhancers	Thymus	Thymus

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