Variant report

Variant	rs3138106
Chromosome Location	chr1:158263379-158263380
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16840067	1.00[ASW][hapmap];1.00[GIH][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17273762	0.94[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3138100	1.00[ASW][hapmap];1.00[GIH][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3138102	1.00[ASW][hapmap];1.00[GIH][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41362848	0.84[ASW][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41403751	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[YRI][hapmap]
rs58054630	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59278565	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59593488	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59802009	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6656732	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6661689	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021951	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021960	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021962	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023926	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023931	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023932	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023933	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023935	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023938	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023940	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023949	1.00[AMR][1000 genomes]
rs73023975	1.00[AMR][1000 genomes]
rs9658822	1.00[AMR][1000 genomes]
rs9659383	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9662642	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv831692	chr1:158223459-158392016	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158257200-158264000	Enhancers	Dnd41	blood
2	chr1:158261600-158263800	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
3	chr1:158261800-158263800	Genic enhancers	Primary B cells from peripheral blood	blood
4	chr1:158261800-158264200	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
5	chr1:158262000-158263600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr1:158263200-158263600	Flanking Active TSS	Thymus	Thymus

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