Variant report

Variant	rs17273762
Chromosome Location	chr1:158258188-158258189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16840067	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3138100	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3138102	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3138106	0.94[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41362848	0.89[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41403751	0.94[YRI][hapmap]
rs58054630	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59278565	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59593488	1.00[AMR][1000 genomes]
rs59802009	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6656732	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6661689	0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021951	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021960	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021962	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023926	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023931	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023932	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023933	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023935	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023938	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023940	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023949	1.00[AMR][1000 genomes]
rs73023975	1.00[AMR][1000 genomes]
rs9658822	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9659383	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9662642	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv831692	chr1:158223459-158392016	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158253800-158262600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:158254600-158259000	Enhancers	Fetal Thymus	thymus
3	chr1:158255400-158258600	Enhancers	Primary T cells from cord blood	blood
4	chr1:158255600-158259400	Enhancers	Thymus	Thymus
5	chr1:158255800-158259600	Weak transcription	Spleen	Spleen
6	chr1:158256800-158259400	Enhancers	Primary B cells from peripheral blood	blood
7	chr1:158257200-158259400	Enhancers	Primary B cells from cord blood	blood
8	chr1:158257200-158259400	Enhancers	GM12878-XiMat	blood
9	chr1:158257200-158259600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr1:158257200-158264000	Enhancers	Dnd41	blood
11	chr1:158257600-158259600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr1:158257800-158259400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr1:158258000-158259000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links