Variant report

Variant	rs59593488
Chromosome Location	chr1:158273972-158273973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16840067	1.00[AMR][1000 genomes]
rs17273762	1.00[AMR][1000 genomes]
rs3138100	1.00[AMR][1000 genomes]
rs3138102	1.00[AMR][1000 genomes]
rs3138106	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41362848	1.00[AMR][1000 genomes]
rs58054630	1.00[AMR][1000 genomes]
rs59278565	1.00[AMR][1000 genomes]
rs59802009	1.00[AMR][1000 genomes]
rs6656732	1.00[AMR][1000 genomes]
rs6661689	1.00[AMR][1000 genomes]
rs73021951	1.00[AMR][1000 genomes]
rs73021960	1.00[AMR][1000 genomes]
rs73021962	1.00[AMR][1000 genomes]
rs73023926	1.00[AMR][1000 genomes]
rs73023931	1.00[AMR][1000 genomes]
rs73023932	1.00[AMR][1000 genomes]
rs73023933	1.00[AMR][1000 genomes]
rs73023935	1.00[AMR][1000 genomes]
rs73023938	1.00[AMR][1000 genomes]
rs73023940	1.00[AMR][1000 genomes]
rs73023949	1.00[AMR][1000 genomes]
rs73023975	1.00[AMR][1000 genomes]
rs9658822	1.00[AMR][1000 genomes]
rs9659383	1.00[AMR][1000 genomes]
rs9662642	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv831692	chr1:158223459-158392016	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158266000-158274000	Weak transcription	Thymus	Thymus
2	chr1:158273600-158275000	ZNF genes & repeats	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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