Variant report

Variant	rs56796555
Chromosome Location	chr1:91769035-91769036
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs59894382	1.00[AMR][1000 genomes]
rs61475134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72952916	1.00[AMR][1000 genomes]
rs72962519	1.00[AFR][1000 genomes]
rs72962547	1.00[AFR][1000 genomes]
rs72962549	1.00[AFR][1000 genomes]
rs72962551	1.00[AFR][1000 genomes]
rs72962574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72966404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72970310	1.00[AFR][1000 genomes]
rs72970312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72970317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72970321	1.00[AFR][1000 genomes]
rs72970324	1.00[AMR][1000 genomes]
rs72970332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72970344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72970362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72970365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72970366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72970375	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv1800676	chr1:91722083-91854389	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv1796351	chr1:91722083-91872374	Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1006022	chr1:91768640-91831196	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91749000-91774600	Weak transcription	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links