Variant report
| Variant | rs59894382 |
|---|---|
| Chromosome Location | chr1:91878006-91878007 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs1506786 | 1.00[AMR][1000 genomes] |
| rs2219395 | 1.00[AMR][1000 genomes] |
| rs34011609 | 1.00[AMR][1000 genomes] |
| rs4658227 | 1.00[AMR][1000 genomes] |
| rs471904 | 1.00[AMR][1000 genomes] |
| rs516593 | 1.00[AMR][1000 genomes] |
| rs517460 | 1.00[AMR][1000 genomes] |
| rs519523 | 1.00[AMR][1000 genomes] |
| rs529778 | 1.00[AMR][1000 genomes] |
| rs56796555 | 1.00[AMR][1000 genomes] |
| rs582636 | 1.00[AMR][1000 genomes] |
| rs590931 | 1.00[AMR][1000 genomes] |
| rs594834 | 1.00[AMR][1000 genomes] |
| rs61475134 | 1.00[AMR][1000 genomes] |
| rs6661449 | 1.00[AMR][1000 genomes] |
| rs72952916 | 1.00[AMR][1000 genomes] |
| rs72962574 | 1.00[AMR][1000 genomes] |
| rs72964495 | 1.00[AMR][1000 genomes] |
| rs72964502 | 1.00[AMR][1000 genomes] |
| rs72966404 | 1.00[AMR][1000 genomes] |
| rs72968489 | 1.00[AMR][1000 genomes] |
| rs72968494 | 1.00[AMR][1000 genomes] |
| rs72968496 | 1.00[AMR][1000 genomes] |
| rs72968502 | 1.00[AMR][1000 genomes] |
| rs72970312 | 1.00[AMR][1000 genomes] |
| rs72970317 | 1.00[AMR][1000 genomes] |
| rs72970324 | 1.00[AMR][1000 genomes] |
| rs72970332 | 1.00[AMR][1000 genomes] |
| rs72970344 | 1.00[AMR][1000 genomes] |
| rs72970362 | 1.00[AMR][1000 genomes] |
| rs72970365 | 1.00[AMR][1000 genomes] |
| rs72970366 | 1.00[AMR][1000 genomes] |
| rs72970375 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949516 | chr1:91644418-92109261 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:91877400-91878800 | Enhancers | Fetal Brain Male | brain |
| 2 | chr1:91878000-91878800 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
