Variant report

Variant	rs519523
Chromosome Location	chr1:91997855-91997856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1506786	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17879470	1.00[AMR][1000 genomes]
rs2219395	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34011609	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4658227	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs471904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs516593	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs517460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs529778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs582636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs590931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs594834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59894382	1.00[AMR][1000 genomes]
rs6661449	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72952916	1.00[AMR][1000 genomes]
rs72968489	1.00[AMR][1000 genomes]
rs72968494	1.00[AMR][1000 genomes]
rs72968496	1.00[AMR][1000 genomes]
rs72968502	1.00[AMR][1000 genomes]
rs72970312	1.00[AMR][1000 genomes]
rs72970317	1.00[AMR][1000 genomes]
rs72970324	1.00[AMR][1000 genomes]
rs72970332	1.00[AMR][1000 genomes]
rs72970344	1.00[AMR][1000 genomes]
rs72970362	1.00[AMR][1000 genomes]
rs72970365	1.00[AMR][1000 genomes]
rs72970366	1.00[AMR][1000 genomes]
rs72970375	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1009560	chr1:91897078-92270781	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91967800-92009600	Weak transcription	Thymus	Thymus
2	chr1:91983000-92002600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr1:91984400-91998000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:91985000-92000400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:91989400-92002800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:91990000-91999400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:91990800-91998000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:91990800-91998000	Weak transcription	Fetal Heart	heart
9	chr1:91990800-92000800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr1:91994600-92002200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:91995400-92002200	Weak transcription	NHDF-Ad	bronchial
12	chr1:91995400-92002400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:91995800-92001200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr1:91995800-92003000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr1:91996000-91998000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr1:91996000-92002800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr1:91996200-91998000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr1:91996200-91998200	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr1:91996400-91998000	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr1:91996400-91998400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr1:91997200-91998200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:91997800-91998000	Enhancers	Primary hematopoietic stem cells	blood
23	chr1:91997800-91998000	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr1:91997800-91999000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr1:91997800-91999000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr1:91997800-91999200	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr1:91997800-92000400	Enhancers	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links