Variant report

Variant	rs72952916
Chromosome Location	chr1:91866635-91866636
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:91865780..91868453-chr1:91965826..91968681,3	K562	blood:
2	chr1:91745154..91747996-chr1:91866350..91867875,2	K562	blood:

Variant related genes	Relation type
ENSG00000097046	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1506786	1.00[AMR][1000 genomes]
rs2219395	1.00[AMR][1000 genomes]
rs34011609	1.00[AMR][1000 genomes]
rs4658227	1.00[AMR][1000 genomes]
rs471904	1.00[AMR][1000 genomes]
rs516593	1.00[AMR][1000 genomes]
rs517460	1.00[AMR][1000 genomes]
rs519523	1.00[AMR][1000 genomes]
rs529778	1.00[AMR][1000 genomes]
rs56796555	1.00[AMR][1000 genomes]
rs582636	1.00[AMR][1000 genomes]
rs590931	1.00[AMR][1000 genomes]
rs594834	1.00[AMR][1000 genomes]
rs59894382	1.00[AMR][1000 genomes]
rs61475134	1.00[AMR][1000 genomes]
rs6661449	1.00[AMR][1000 genomes]
rs72962574	1.00[AMR][1000 genomes]
rs72964495	1.00[AMR][1000 genomes]
rs72964502	1.00[AMR][1000 genomes]
rs72966404	1.00[AMR][1000 genomes]
rs72968489	1.00[AMR][1000 genomes]
rs72968494	1.00[AMR][1000 genomes]
rs72968496	1.00[AMR][1000 genomes]
rs72968502	1.00[AMR][1000 genomes]
rs72970312	1.00[AMR][1000 genomes]
rs72970317	1.00[AMR][1000 genomes]
rs72970324	1.00[AMR][1000 genomes]
rs72970332	1.00[AMR][1000 genomes]
rs72970344	1.00[AMR][1000 genomes]
rs72970362	1.00[AMR][1000 genomes]
rs72970365	1.00[AMR][1000 genomes]
rs72970366	1.00[AMR][1000 genomes]
rs72970375	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv1796351	chr1:91722083-91872374	Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv546806	chr1:91780408-91875505	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91853200-91866800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:91853200-91869200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr1:91853200-91869200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr1:91853200-91869400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:91853200-91869600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr1:91857800-91866800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:91861600-91869400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr1:91863600-91869400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:91863600-91869600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:91864000-91866800	Weak transcription	Colon Smooth Muscle	Colon
11	chr1:91864200-91869400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr1:91864200-91869600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr1:91864400-91869400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:91865000-91869600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr1:91865200-91869200	Weak transcription	Fetal Kidney	kidney
16	chr1:91865800-91867000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:91866000-91869200	Weak transcription	Brain Germinal Matrix	brain
18	chr1:91866200-91869400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr1:91866200-91869600	Weak transcription	Psoas Muscle	Psoas

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