Variant report

No.	Distal block	Cell Line	Cell type
1	chr1:92006707..92009615-chr1:92012978..92014986,2	K562	blood:
2	chr1:92002307..92004787-chr1:92005298..92007130,2	K562	blood:
3	chr1:92006858..92008618-chr1:92021997..92024945,2	K562	blood:
4	chr1:92002164..92004787-chr1:92005220..92009232,4	K562	blood:
5	chr1:92005984..92008440-chr1:92009728..92012015,2	K562	blood:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1506786	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17879470	1.00[AMR][1000 genomes]
rs2219395	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2478168	1.00[MEX][hapmap]
rs2986226	1.00[MEX][hapmap]
rs34011609	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4658227	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs471904	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs516593	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs517460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs519523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs529778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs546872	1.00[MEX][hapmap]
rs590931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs594834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59894382	1.00[AMR][1000 genomes]
rs6661449	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72952916	1.00[AMR][1000 genomes]
rs72968494	1.00[AMR][1000 genomes]
rs72968496	1.00[AMR][1000 genomes]
rs72968502	1.00[AMR][1000 genomes]
rs72970312	1.00[AMR][1000 genomes]
rs72970317	1.00[AMR][1000 genomes]
rs72970324	1.00[AMR][1000 genomes]
rs72970332	1.00[AMR][1000 genomes]
rs72970344	1.00[AMR][1000 genomes]
rs72970362	1.00[AMR][1000 genomes]
rs72970365	1.00[AMR][1000 genomes]
rs72970366	1.00[AMR][1000 genomes]
rs72970375	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1009560	chr1:91897078-92270781	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91967800-92009600	Weak transcription	Thymus	Thymus
2	chr1:92003000-92013800	Weak transcription	Spleen	Spleen
3	chr1:92003600-92018000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:92005000-92009000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr1:92005800-92008200	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr1:92006200-92007400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr1:92006200-92007800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr1:92006200-92008600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr1:92006400-92008000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr1:92006400-92008200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr1:92006400-92008800	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr1:92006600-92008000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:92006600-92008000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr1:92006600-92012600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr1:92006600-92016400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:92006800-92008800	Enhancers	Primary T cells fromperipheralblood	blood

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