The 2.0 version of rSNPBase

Variant report

Variant rs56805665
Chromosome Location chr5:108234809-108234810
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:108173400-108239800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
2 chr5:108183800-108260400 Weak transcription Ovary ovary
3 chr5:108194600-108260000 Weak transcription Fetal Intestine Large intestine
4 chr5:108194800-108236200 Weak transcription Hela-S3 cervix
5 chr5:108197000-108268200 Weak transcription Fetal Muscle Trunk muscle
6 chr5:108198600-108235000 Weak transcription Fetal Kidney kidney
7 chr5:108199200-108271400 Weak transcription Aorta Aorta
8 chr5:108200200-108246400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
9 chr5:108203800-108323400 Weak transcription Primary B cells from cord blood blood
10 chr5:108204400-108237800 Weak transcription Monocytes-CD14+_RO01746 blood
11 chr5:108205400-108241400 Weak transcription Duodenum Smooth Muscle Duodenum
12 chr5:108208200-108268800 Weak transcription Primary T cells from cord blood blood
13 chr5:108212800-108236200 Weak transcription NHDF-Ad bronchial
14 chr5:108214200-108272200 Weak transcription Gastric stomach
15 chr5:108217200-108236600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
16 chr5:108217400-108244200 Weak transcription Primary monocytes fromperipheralblood blood
17 chr5:108217400-108253200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr5:108217600-108323200 Weak transcription Left Ventricle heart
19 chr5:108221000-108236200 Weak transcription NH-A brain
20 chr5:108221000-108236400 Weak transcription NHLF lung
21 chr5:108221000-108241200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr5:108221200-108236200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
23 chr5:108221200-108236200 Weak transcription Osteobl bone
24 chr5:108221400-108280600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
25 chr5:108221600-108238200 Weak transcription Cortex derived primary cultured neurospheres brain
26 chr5:108223400-108236800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
27 chr5:108223400-108247000 Weak transcription Brain Substantia Nigra brain
28 chr5:108227600-108244400 Weak transcription Right Ventricle heart
29 chr5:108227800-108245200 Weak transcription Rectal Mucosa Donor 29 rectum
30 chr5:108228200-108240200 Weak transcription Fetal Heart heart
31 chr5:108228600-108236000 Weak transcription Rectal Mucosa Donor 31 rectum
32 chr5:108228600-108247600 Weak transcription Liver Liver
33 chr5:108229600-108244200 Weak transcription Stomach Smooth Muscle stomach
34 chr5:108229600-108269800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
35 chr5:108230200-108239800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
36 chr5:108230200-108302400 Weak transcription HSMM muscle
37 chr5:108230600-108236000 Weak transcription Fetal Stomach stomach
38 chr5:108230600-108236400 Weak transcription Skeletal Muscle Male skeletal muscle
39 chr5:108230600-108249400 Weak transcription Fetal Muscle Leg muscle
40 chr5:108230600-108260000 Weak transcription Fetal Intestine Small intestine
41 chr5:108230800-108237400 Weak transcription GM12878-XiMat blood
42 chr5:108231600-108236200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr5:108232800-108235000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr5:108232800-108235200 Strong transcription Adipose Nuclei Adipose
45 chr5:108232800-108235200 Weak transcription Skeletal Muscle Female skeletal muscle
46 chr5:108232800-108235400 Strong transcription Breast Myoepithelial Primary Cells Breast
47 chr5:108234000-108235200 Enhancers NHEK skin
48 chr5:108234000-108246400 Weak transcription Fetal Lung lung
49 chr5:108234400-108235000 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
50 chr5:108234400-108235200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015