Variant report

Variant	rs6883405
Chromosome Location	chr5:108397400-108397401
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10079418	1.00[EUR][1000 genomes]
rs33940843	1.00[EUR][1000 genomes]
rs35990968	1.00[EUR][1000 genomes]
rs55769405	1.00[EUR][1000 genomes]
rs55790655	1.00[EUR][1000 genomes]
rs56805665	1.00[EUR][1000 genomes]
rs58862033	1.00[EUR][1000 genomes]
rs6859699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6883122	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6883695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6888080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6888232	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6895203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73781903	1.00[EUR][1000 genomes]
rs73781904	1.00[EUR][1000 genomes]
rs73781906	1.00[EUR][1000 genomes]
rs73781908	1.00[EUR][1000 genomes]
rs73781909	1.00[EUR][1000 genomes]
rs73781912	1.00[EUR][1000 genomes]
rs7707344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7712731	1.00[EUR][1000 genomes]
rs7718701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7722410	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv882692	chr5:108391660-108474166	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882693	chr5:108391660-108502493	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882694	chr5:108391660-108524416	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108356000-108399000	Weak transcription	HSMM	muscle
2	chr5:108360400-108400400	Weak transcription	NHEK	skin
3	chr5:108360400-108404800	Weak transcription	Colon Smooth Muscle	Colon
4	chr5:108360400-108425200	Weak transcription	Aorta	Aorta
5	chr5:108377000-108399000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:108388000-108401200	Weak transcription	Gastric	stomach
7	chr5:108388200-108401800	Weak transcription	Ovary	ovary
8	chr5:108388800-108397600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:108388800-108412000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:108390200-108398400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:108390600-108401600	Weak transcription	HSMMtube	muscle
12	chr5:108396000-108399600	Enhancers	NHDF-Ad	bronchial
13	chr5:108396600-108398400	Enhancers	Adipose Nuclei	Adipose
14	chr5:108396600-108399600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:108397000-108397400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:108397200-108399000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr5:108397200-108399600	Enhancers	Osteobl	bone
18	chr5:108397400-108398400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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