Variant report

Variant	rs6859699
Chromosome Location	chr5:108277682-108277683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs33940843	1.00[EUR][1000 genomes]
rs35990968	1.00[EUR][1000 genomes]
rs55745292	1.00[EUR][1000 genomes]
rs55769405	1.00[EUR][1000 genomes]
rs55790655	1.00[EUR][1000 genomes]
rs55792714	1.00[EUR][1000 genomes]
rs55913202	1.00[EUR][1000 genomes]
rs56002991	1.00[EUR][1000 genomes]
rs56195269	1.00[EUR][1000 genomes]
rs56228037	1.00[EUR][1000 genomes]
rs56264243	1.00[EUR][1000 genomes]
rs56805665	1.00[EUR][1000 genomes]
rs56932426	1.00[EUR][1000 genomes]
rs57135232	1.00[EUR][1000 genomes]
rs57331813	1.00[AMR][1000 genomes]
rs58773536	1.00[EUR][1000 genomes]
rs58862033	1.00[EUR][1000 genomes]
rs60392464	1.00[EUR][1000 genomes]
rs6594339	1.00[AMR][1000 genomes]
rs6879203	1.00[AMR][1000 genomes]
rs6883122	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6883405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6883695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73780571	1.00[EUR][1000 genomes]
rs73780580	1.00[EUR][1000 genomes]
rs73780582	1.00[EUR][1000 genomes]
rs73780584	1.00[EUR][1000 genomes]
rs73780585	1.00[EUR][1000 genomes]
rs73780586	1.00[EUR][1000 genomes]
rs73780594	1.00[EUR][1000 genomes]
rs73780595	1.00[EUR][1000 genomes]
rs73780596	1.00[EUR][1000 genomes]
rs73780598	1.00[EUR][1000 genomes]
rs73780599	1.00[EUR][1000 genomes]
rs73780600	1.00[EUR][1000 genomes]
rs73780602	1.00[EUR][1000 genomes]
rs73781903	1.00[EUR][1000 genomes]
rs73781904	1.00[EUR][1000 genomes]
rs73781906	1.00[EUR][1000 genomes]
rs73781908	1.00[EUR][1000 genomes]
rs73781909	1.00[EUR][1000 genomes]
rs73781912	1.00[EUR][1000 genomes]
rs7707344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7714960	1.00[AMR][1000 genomes]
rs7719100	1.00[AMR][1000 genomes]
rs7734770	1.00[AMR][1000 genomes]
rs7736849	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1016343	chr5:108220116-108364687	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv882691	chr5:108229760-108366473	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108203800-108323400	Weak transcription	Primary B cells from cord blood	blood
2	chr5:108217600-108323200	Weak transcription	Left Ventricle	heart
3	chr5:108221400-108280600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:108230200-108302400	Weak transcription	HSMM	muscle
5	chr5:108244200-108295000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:108254000-108311200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:108268200-108280800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:108268400-108301400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:108270600-108289200	Weak transcription	K562	blood
10	chr5:108271200-108278800	Weak transcription	Ovary	ovary
11	chr5:108273400-108278600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:108277400-108278400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:108277600-108277800	Enhancers	Brain Hippocampus Middle	brain
14	chr5:108277600-108278400	Enhancers	Brain Anterior Caudate	brain
15	chr5:108277600-108279400	Enhancers	Brain Germinal Matrix	brain
16	chr5:108277600-108279400	Enhancers	Fetal Lung	lung
17	chr5:108277600-108279800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr5:108277600-108283800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr5:108277600-108322400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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