Variant report

Variant rs56810978
Chromosome Location chr13:49166937-49166938
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:49161000-49169600 Weak transcription HSMM muscle
2 chr13:49161200-49167400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr13:49161200-49167400 Weak transcription H9 Cell Line embryonic stem cell
4 chr13:49161400-49169600 Weak transcription Right Atrium heart
5 chr13:49161400-49176400 Weak transcription Right Ventricle heart
6 chr13:49163000-49167000 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
7 chr13:49163600-49167400 Enhancers Fetal Intestine Large intestine
8 chr13:49163800-49168200 Enhancers Fetal Intestine Small intestine
9 chr13:49163800-49170800 Enhancers Stomach Mucosa stomach
10 chr13:49164000-49169800 Enhancers HepG2 liver
11 chr13:49165000-49169600 Weak transcription Fetal Muscle Leg muscle
12 chr13:49165000-49169600 Weak transcription Rectal Mucosa Donor 29 rectum
13 chr13:49165200-49169600 Weak transcription Left Ventricle heart
14 chr13:49165200-49169600 Weak transcription Small Intestine intestine
15 chr13:49165400-49167400 Weak transcription Placenta Placenta
16 chr13:49165400-49167800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
17 chr13:49165400-49168000 Enhancers iPS-15b Cell Line embryonic stem cell
18 chr13:49165400-49169600 Weak transcription Gastric stomach
19 chr13:49165400-49169600 Weak transcription Pancreas Pancrea
20 chr13:49165400-49169600 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr13:49165400-49169600 Weak transcription HSMMtube muscle
22 chr13:49165600-49168400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
23 chr13:49165600-49168800 Weak transcription Hela-S3 cervix
24 chr13:49165600-49169600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr13:49165800-49170000 Enhancers H1 Cell Line embryonic stem cell
26 chr13:49166000-49168200 Enhancers HUES48 Cell Line embryonic stem cell
27 chr13:49166000-49170000 Enhancers HUES6 Cell Line embryonic stem cell
28 chr13:49166000-49170000 Enhancers HUES64 Cell Line embryonic stem cell
29 chr13:49166200-49167000 Flanking Active TSS iPS-20b Cell Line embryonic stem cell
30 chr13:49166200-49167400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
31 chr13:49166200-49173800 Weak transcription Fetal Kidney kidney
32 chr13:49166400-49170000 Enhancers iPS-18 Cell Line embryonic stem cell
33 chr13:49166600-49167400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
34 chr13:49166600-49167600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
35 chr13:49166600-49167600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr13:49166600-49168400 Enhancers Primary hematopoietic stem cells short term culture blood
37 chr13:49166600-49169200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
38 chr13:49166600-49169600 Weak transcription ES-WA7 Cell Line embryonic stem cell
39 chr13:49166600-49169600 Weak transcription Breast Myoepithelial Primary Cells Breast
40 chr13:49166800-49167000 Flanking Active TSS Duodenum Mucosa Duodenum
41 chr13:49166800-49167000 Enhancers GM12878-XiMat blood
42 chr13:49166800-49169000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
43 chr13:49166800-49169800 Enhancers ES-I3 Cell Line embryonic stem cell

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