Variant report

Variant	rs61567568
Chromosome Location	chr13:49171098-49171099
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs28414460	0.84[AFR][1000 genomes]
rs28646083	1.00[AFR][1000 genomes]
rs28674973	1.00[AFR][1000 genomes]
rs3803187	1.00[EUR][1000 genomes]
rs56810978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61479059	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7319339	0.97[ASN][1000 genomes]
rs7337926	1.00[ASN][1000 genomes]
rs7985602	1.00[AMR][1000 genomes]
rs7998012	1.00[AMR][1000 genomes]
rs9331979	0.82[AFR][1000 genomes]
rs9331993	0.82[AFR][1000 genomes]
rs9332001	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041275	chr13:49045566-49242357	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv541769	chr13:49045566-49242357	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv832604	chr13:49061081-49281807	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49161400-49176400	Weak transcription	Right Ventricle	heart
2	chr13:49166200-49173800	Weak transcription	Fetal Kidney	kidney
3	chr13:49168200-49174800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:49168400-49175000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr13:49169800-49172200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr13:49169800-49177800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr13:49170000-49174800	Weak transcription	HSMM	muscle
8	chr13:49170000-49176600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr13:49170400-49172400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr13:49170400-49172600	Weak transcription	Pancreas	Pancrea
11	chr13:49170400-49175200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr13:49170400-49176400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr13:49170400-49176600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr13:49170600-49173200	Weak transcription	Hela-S3	cervix
15	chr13:49171000-49171200	Weak transcription	Dnd41	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links