Variant report

Variant	rs9331993
Chromosome Location	chr13:49089110-49089111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:49081743..49084542-chr13:49085954..49089235,3	K562	blood:
2	chr13:49088221..49089957-chr13:49104157..49106836,2	MCF-7	breast:
3	chr13:49087919..49090569-chr13:49105572..49108437,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136161	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs28646083	0.82[AFR][1000 genomes]
rs28674973	0.82[AFR][1000 genomes]
rs3092863	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4151419	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4151432	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4151495	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4151545	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4151581	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4151627	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56810978	0.82[AFR][1000 genomes]
rs61567568	0.82[AFR][1000 genomes]
rs61735169	1.00[AMR][1000 genomes]
rs7320277	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7329349	1.00[AMR][1000 genomes]
rs7329387	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7333971	1.00[AMR][1000 genomes]
rs7982092	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7982457	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8000807	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8002958	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9331979	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332001	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332059	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs9332073	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832602	chr13:49003159-49167781	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1041275	chr13:49045566-49242357	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv541769	chr13:49045566-49242357	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv832604	chr13:49061081-49281807	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv983709	chr13:49086347-49097905	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49054000-49094000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:49067200-49105200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr13:49067200-49105400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr13:49067800-49098000	Weak transcription	Right Ventricle	heart
5	chr13:49068000-49105600	Weak transcription	Gastric	stomach
6	chr13:49068200-49102600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr13:49071200-49105600	Weak transcription	Fetal Brain Male	brain
8	chr13:49071800-49105800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr13:49072200-49095600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr13:49075600-49093400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr13:49075600-49095200	Weak transcription	Fetal Intestine Large	intestine
12	chr13:49075800-49093200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr13:49076600-49097400	Weak transcription	Pancreas	Pancrea
14	chr13:49079600-49091000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr13:49079600-49092200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr13:49080600-49105600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr13:49080800-49102200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr13:49080800-49105400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr13:49081000-49090200	Weak transcription	HSMM	muscle
20	chr13:49081400-49105600	Weak transcription	Placenta	Placenta
21	chr13:49083400-49094400	Weak transcription	Fetal Intestine Small	intestine
22	chr13:49083400-49095800	Weak transcription	Spleen	Spleen
23	chr13:49083800-49105600	Weak transcription	Esophagus	oesophagus
24	chr13:49085000-49091200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr13:49085000-49096000	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr13:49085000-49096600	Weak transcription	Small Intestine	intestine
27	chr13:49085000-49104800	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr13:49085000-49104800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr13:49085200-49096000	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr13:49085200-49100400	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr13:49085200-49105600	Weak transcription	Fetal Thymus	thymus
32	chr13:49085600-49089600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr13:49086200-49089200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr13:49086200-49090000	Weak transcription	Brain Hippocampus Middle	brain
35	chr13:49086200-49090400	Weak transcription	Fetal Stomach	stomach
36	chr13:49086200-49090800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr13:49086200-49091200	Weak transcription	Psoas Muscle	Psoas
38	chr13:49086200-49091200	Weak transcription	Stomach Smooth Muscle	stomach
39	chr13:49086200-49094400	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr13:49086200-49102200	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr13:49086200-49102400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr13:49086200-49105600	Weak transcription	Lung	lung
43	chr13:49086200-49105600	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr13:49086200-49105600	Weak transcription	HSMMtube	muscle
45	chr13:49086400-49089400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr13:49086400-49089600	Weak transcription	Brain Substantia Nigra	brain
47	chr13:49086400-49089800	Weak transcription	Brain Anterior Caudate	brain
48	chr13:49086400-49090200	Weak transcription	Right Atrium	heart
49	chr13:49086400-49094400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr13:49086400-49094400	Weak transcription	NHEK	skin

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