Variant report

Variant	rs56811379
Chromosome Location	chr17:17028110-17028111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17023341..17025432-chr17:17027098..17029128,3	K562	blood:
2	chr17:17023341..17025938-chr17:17027098..17030092,2	K562	blood:
3	chr17:17026085..17028374-chr17:17031939..17033619,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10048152	0.81[AMR][1000 genomes]
rs28829096	0.81[AMR][1000 genomes]
rs56343767	0.81[AMR][1000 genomes]
rs58169814	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58442149	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60029796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60192272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60332371	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60890438	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61608940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7223145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7223758	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979057	0.81[AMR][1000 genomes]
rs73979079	0.81[AMR][1000 genomes]
rs73979085	0.81[AMR][1000 genomes]
rs8072168	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs8079021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907728	chr17:17013189-17095487	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv984510	chr17:17015688-17048858	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17006200-17033000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr17:17010000-17032000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr17:17011200-17028800	Weak transcription	Fetal Brain Female	brain
4	chr17:17012000-17035200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr17:17015400-17035200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr17:17015800-17030000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr17:17019200-17028800	Weak transcription	HSMMtube	muscle
8	chr17:17019800-17031200	Weak transcription	Hela-S3	cervix
9	chr17:17020800-17028400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr17:17022600-17028200	Weak transcription	Brain Germinal Matrix	brain
11	chr17:17022800-17028400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr17:17022800-17028600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr17:17022800-17029800	Weak transcription	Dnd41	blood
14	chr17:17023000-17028200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr17:17023000-17030200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr17:17023200-17034200	Weak transcription	NH-A	brain
17	chr17:17023400-17028600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr17:17023600-17028400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr17:17023600-17028600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr17:17023600-17028800	Weak transcription	Aorta	Aorta
21	chr17:17023600-17030600	Weak transcription	Osteobl	bone
22	chr17:17023800-17028800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr17:17023800-17029800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr17:17024200-17043200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr17:17024400-17028400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr17:17024400-17028800	Weak transcription	NHDF-Ad	bronchial
27	chr17:17024400-17029600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr17:17024400-17030200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr17:17024400-17030200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr17:17024400-17030200	Weak transcription	HMEC	breast
31	chr17:17024400-17032800	Weak transcription	HUVEC	blood vessel
32	chr17:17024400-17039800	Weak transcription	Small Intestine	intestine
33	chr17:17024600-17029000	Weak transcription	NHLF	lung
34	chr17:17024600-17036000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr17:17024600-17045600	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr17:17024800-17028600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr17:17024800-17028600	Weak transcription	Adipose Nuclei	Adipose
38	chr17:17024800-17028800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr17:17024800-17028800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr17:17024800-17030000	Weak transcription	Duodenum Mucosa	Duodenum
41	chr17:17024800-17030200	Weak transcription	Liver	Liver
42	chr17:17024800-17030200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr17:17024800-17030600	Weak transcription	HepG2	liver
44	chr17:17024800-17034200	Weak transcription	Fetal Kidney	kidney
45	chr17:17025000-17028400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr17:17025000-17028400	Weak transcription	Esophagus	oesophagus
47	chr17:17025000-17028600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr17:17025000-17028600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr17:17025000-17028600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr17:17025000-17028600	Weak transcription	Placenta	Placenta

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