Variant report

Variant	rs61608940
Chromosome Location	chr17:17056740-17056741
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr17:17056726-17057374	MCF10A-Er-Src	breast:	n/a	chr17:17057160-17057169

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:17053885..17056874-chr17:17067552..17069727,2	K562	blood:

Variant related genes	Relation type
MPRIP	TF binding region
ENSG00000133030	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10048152	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1131632	1.00[EUR][1000 genomes]
rs16961406	1.00[EUR][1000 genomes]
rs28829096	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4485421	1.00[EUR][1000 genomes]
rs55792503	1.00[EUR][1000 genomes]
rs56247606	1.00[EUR][1000 genomes]
rs56343767	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56811379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56912118	1.00[EUR][1000 genomes]
rs58169814	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58442149	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58690840	1.00[EUR][1000 genomes]
rs58702370	1.00[EUR][1000 genomes]
rs60029796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60192272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60332371	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60364428	1.00[EUR][1000 genomes]
rs60545734	1.00[EUR][1000 genomes]
rs60697210	1.00[EUR][1000 genomes]
rs60890438	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61024568	1.00[EUR][1000 genomes]
rs61218165	1.00[EUR][1000 genomes]
rs7219836	1.00[EUR][1000 genomes]
rs7223145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7223758	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7225496	1.00[EUR][1000 genomes]
rs73979025	1.00[EUR][1000 genomes]
rs73979028	1.00[EUR][1000 genomes]
rs73979045	1.00[EUR][1000 genomes]
rs73979046	1.00[EUR][1000 genomes]
rs73979048	1.00[EUR][1000 genomes]
rs73979049	1.00[EUR][1000 genomes]
rs73979056	1.00[EUR][1000 genomes]
rs73979057	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979063	1.00[EUR][1000 genomes]
rs73979079	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979080	1.00[EUR][1000 genomes]
rs73979085	0.81[AMR][1000 genomes]
rs73979088	1.00[EUR][1000 genomes]
rs73979096	1.00[EUR][1000 genomes]
rs73979097	1.00[EUR][1000 genomes]
rs73981903	1.00[EUR][1000 genomes]
rs73981904	1.00[EUR][1000 genomes]
rs8072168	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs8079021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907728	chr17:17013189-17095487	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv524958	chr17:17029718-17060805	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17029800-17088400	Strong transcription	Dnd41	blood
2	chr17:17030000-17088000	Strong transcription	Duodenum Mucosa	Duodenum
3	chr17:17030400-17059800	Strong transcription	Fetal Intestine Small	intestine
4	chr17:17030400-17079200	Strong transcription	Sigmoid Colon	Sigmoid Colon
5	chr17:17030400-17089200	Strong transcription	Fetal Intestine Large	intestine
6	chr17:17031000-17078800	Strong transcription	Rectal Mucosa Donor 29	rectum
7	chr17:17031200-17057200	Strong transcription	Primary T cells from cord blood	blood
8	chr17:17031200-17067800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr17:17032000-17073800	Strong transcription	Fetal Lung	lung
10	chr17:17032200-17073600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr17:17034800-17072800	Strong transcription	Placenta Amnion	Placenta Amnion
12	chr17:17037200-17074200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr17:17038400-17093800	Strong transcription	Fetal Brain Female	brain
14	chr17:17038800-17058400	Weak transcription	Fetal Brain Male	brain
15	chr17:17044200-17083600	Strong transcription	Thymus	Thymus
16	chr17:17045000-17088400	Strong transcription	Brain Germinal Matrix	brain
17	chr17:17045200-17071600	Strong transcription	Primary B cells from cord blood	blood
18	chr17:17045200-17075600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr17:17045200-17093800	Strong transcription	Fetal Stomach	stomach
20	chr17:17045600-17071000	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr17:17045600-17072800	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr17:17045800-17059200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr17:17045800-17065600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr17:17046000-17059800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr17:17047400-17059400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr17:17047600-17066200	Weak transcription	K562	blood
27	chr17:17050400-17073800	Strong transcription	Fetal Muscle Leg	muscle
28	chr17:17050800-17057200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr17:17051000-17093200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr17:17052400-17056800	Genic enhancers	HSMM	muscle
31	chr17:17053000-17078000	Strong transcription	Primary B cells from peripheral blood	blood
32	chr17:17053200-17060600	Genic enhancers	NHEK	skin
33	chr17:17053200-17060800	Genic enhancers	HMEC	breast
34	chr17:17053200-17061000	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr17:17053200-17067200	Strong transcription	HepG2	liver
36	chr17:17053200-17072600	Strong transcription	Pancreas	Pancrea
37	chr17:17053200-17074600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr17:17053200-17088200	Strong transcription	Gastric	stomach
39	chr17:17053400-17062800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr17:17053600-17060600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr17:17054000-17062200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr17:17054200-17057000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr17:17054200-17061800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr17:17054600-17056800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr17:17054600-17056800	Genic enhancers	Brain Inferior Temporal Lobe	brain
46	chr17:17054600-17057000	Genic enhancers	Right Ventricle	heart
47	chr17:17054600-17057400	Genic enhancers	Spleen	Spleen
48	chr17:17054600-17057600	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr17:17054600-17059400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
50	chr17:17054600-17064000	Strong transcription	iPS-15b Cell Line	embryonic stem cell

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