Variant report

Variant	rs61024568
Chromosome Location	chr17:17001810-17001811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16992481..16994529-chr17:17001211..17003120,2	MCF-7	breast:
2	chr17:16992165..16993827-chr17:16999457..17002093,2	K562	blood:
3	chr17:17000263..17003828-chr17:17006059..17008926,3	MCF-7	breast:
4	chr17:16989031..16991528-chr17:17000273..17002775,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10048152	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1131632	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16961406	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28829096	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4485421	1.00[EUR][1000 genomes]
rs55792503	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56247606	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56343767	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56912118	1.00[EUR][1000 genomes]
rs58169814	1.00[EUR][1000 genomes]
rs58377774	1.00[AFR][1000 genomes]
rs58442149	1.00[EUR][1000 genomes]
rs58690840	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58702370	1.00[EUR][1000 genomes]
rs60029796	1.00[EUR][1000 genomes]
rs60192272	1.00[EUR][1000 genomes]
rs60332371	1.00[EUR][1000 genomes]
rs60364428	1.00[EUR][1000 genomes]
rs60545734	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60697210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60890438	1.00[EUR][1000 genomes]
rs61218165	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61608940	1.00[EUR][1000 genomes]
rs7219836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7223145	1.00[EUR][1000 genomes]
rs7223758	1.00[EUR][1000 genomes]
rs7225496	1.00[EUR][1000 genomes]
rs73979025	1.00[EUR][1000 genomes]
rs73979028	1.00[EUR][1000 genomes]
rs73979045	1.00[EUR][1000 genomes]
rs73979046	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979047	0.89[AFR][1000 genomes]
rs73979048	1.00[EUR][1000 genomes]
rs73979049	1.00[EUR][1000 genomes]
rs73979056	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979057	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979079	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979085	0.84[AMR][1000 genomes]
rs73979088	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979092	0.83[AFR][1000 genomes]
rs73979096	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979097	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73981903	1.00[EUR][1000 genomes]
rs73981904	1.00[EUR][1000 genomes]
rs8079021	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059280	chr17:16975059-17017957	Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16986800-17013600	Weak transcription	HUVEC	blood vessel
2	chr17:16992400-17010000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr17:16993200-17003800	Genic enhancers	Fetal Intestine Small	intestine
4	chr17:16993400-17011400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr17:16994600-17003400	Enhancers	Ovary	ovary
6	chr17:16994600-17011600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr17:16995400-17002400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr17:16996400-17006200	Weak transcription	Liver	Liver
9	chr17:16997000-17016600	Enhancers	Left Ventricle	heart
10	chr17:16997200-17005000	Weak transcription	K562	blood
11	chr17:16997400-17006200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr17:16997400-17010000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr17:16998000-17003600	Genic enhancers	Fetal Stomach	stomach
14	chr17:16998200-17002800	Enhancers	NHDF-Ad	bronchial
15	chr17:16998200-17016200	Enhancers	Fetal Heart	heart
16	chr17:16998400-17002600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr17:16998400-17002600	Enhancers	Stomach Mucosa	stomach
18	chr17:16998600-17002200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr17:16998600-17002200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr17:16998600-17002600	Enhancers	Brain Substantia Nigra	brain
21	chr17:16998600-17002800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr17:16998600-17003800	Enhancers	Right Atrium	heart
23	chr17:16998600-17004000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr17:16998600-17006800	Enhancers	Psoas Muscle	Psoas
25	chr17:16998600-17015400	Genic enhancers	Fetal Muscle Leg	muscle
26	chr17:16998600-17016600	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr17:16998800-17002200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr17:16998800-17003000	Enhancers	Brain Cingulate Gyrus	brain
29	chr17:16999000-17002000	Strong transcription	Thymus	Thymus
30	chr17:16999000-17002400	Genic enhancers	Muscle Satellite Cultured Cells	--
31	chr17:16999000-17002800	Genic enhancers	Duodenum Mucosa	Duodenum
32	chr17:16999000-17012800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr17:16999200-17002600	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr17:16999200-17002600	Enhancers	Brain Angular Gyrus	brain
35	chr17:16999200-17002800	Genic enhancers	Brain Hippocampus Middle	brain
36	chr17:16999200-17003000	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr17:16999200-17006400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr17:16999400-17002000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr17:16999400-17002600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr17:16999400-17002800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr17:16999400-17002800	Enhancers	Brain Anterior Caudate	brain
42	chr17:16999400-17002800	Enhancers	NHLF	lung
43	chr17:16999400-17003000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr17:16999600-17002000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr17:16999600-17002400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr17:16999600-17002600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr17:16999600-17003600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr17:16999600-17005000	Weak transcription	Gastric	stomach
49	chr17:16999600-17008200	Strong transcription	Primary B cells from peripheral blood	blood
50	chr17:16999800-17002000	Strong transcription	Primary T helper cells fromperipheralblood	blood

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